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BaseInfo

ncRNA ID novel_osa_miR3109
Species Oryza sativa
Class miRNA
Genome position Chr11:19693881-19694090 [-]
Reference genome IRGSP-1.0
Source SRR2040384
Length 24
Mature sequence(if miRNA) 1 - UUAUUAGUCUACGUUAAAUACUUC - 24
Stem-loop(if miRNA) -   -   A               C     AUA  C     CUCU GA                  C A                          C     GAAGU
 AGG AUU AAUGUAGACUAAUGA AAAAC   UU CAUAA    G  CUAAUUCGUGAGACGAAU U UUGAGCCUAAUUAAUCCAUGAUUAGC UAUGU     U
 ||| ||| ||||||||||||||| |||||   || |||||    |  |||||||||||||||||| | |||||||||||||||||||||||||| |||||     A
 UUC UAA UUGCAUCUGAUUAUU UUUUG   AA GUAUU    C  GAUUAAGCGCUCUGUUUA A AAUUCGGAUUAAUUAGGUAUUAAUCG GUACA     C
C   A   A               A     ---  C     UACU UC                  A A                          U     AAUGA
Stem-loop sequence AGGAUUAAAUGUAGACUAAUGACAAAACAUAUUCCAUAACUCUGGACUAAUUCGUGAGACGAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCCUAUGUGAAGUUACAGUAAACAUGUGCUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUUGUCUCGCGAAUUAGCUCUCAUUUAUGCAAGUUUUAUUAUUAGUCUACGUUAAAUACUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK108166.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||||||||||
targets:1214   GAAGUAUUAAACGUAGACUAAUAA   1237

1.0 Oryza sativa Japonica Group cDNA clone:002-139-H06, full insert sequence NA coding protein psRNATarget
CT837754.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||||||||||
targets:1228   GAAGUAUUAAACGUAGACUAAUAA   1251

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence NA coding protein psRNATarget
CT837736.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||||||||||
targets:21   GAAGUAUUAAACGUAGACUAAUAA   44

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M17, full insert sequence NA coding protein psRNATarget
AK068835.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||||||||||
targets:2632   GAAGUAUUAAACGUAGACUAAUAA   2655

1.0 Oryza sativa Japonica Group cDNA clone:J013158G20, full insert sequence NA coding protein psRNATarget
AK065982.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||||||||||
targets:2737   GAAGUAUUAAACGUAGACUAAUAA   2760

1.0 Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence NA coding protein psRNATarget
AK102878.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||=||||||||||||
targets:1994   GAAGUAUUAAAUGUAGACUAAUAA   2017

2.5 Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence NA coding protein psRNATarget
XM_015785585.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||=||||||||||||
targets:2065   GAAGUAUUAAAUGUAGACUAAUAA   2088

2.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
XM_015785584.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||=||||||||||||
targets:2198   GAAGUAUUAAAUGUAGACUAAUAA   2221

2.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK100594.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||||||||=||||||
targets:2546   GAAGUAUUAAACGUAGAUUAAUAA   2569

2.5 Oryza sativa Japonica Group cDNA clone:J023106M03, full insert sequence NA coding protein psRNATarget
AK103572.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||=||||||||||||
targets:2676   GAAGUAUUAAAUGUAGACUAAUAA   2699

2.5 Oryza sativa Japonica Group cDNA clone:J033132N13, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||=||||||||||||
targets:2369   GAAGUAUUAAAUGUAGACUAAUAA   2392

2.5 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK120736.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||=||||||||||||
targets:2990   GAAGUAUUCAAUGUAGACUAAUAA   3013

2.5 Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence NA coding protein psRNATarget
CT836363.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||=||||||||||||
targets:821   AAAGUAUUAAAUGUAGACUAAUAA   844

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA002O20, full insert sequence NA coding protein psRNATarget
CT837877.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||=||||||||||||
targets:2060   AAAGUAUUAAAUGUAGACUAAUAA   2083

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240O21, full insert sequence NA coding protein psRNATarget
AK241445.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||=||||||||||||
targets:2700   AAAGUAUUAAAUGUAGACUAAUAA   2723

2.5 Oryza sativa Japonica Group cDNA, clone: J065162L11, full insert sequence NA coding protein psRNATarget
XM_015786901.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||=||||||||||||
targets:2717   AAAGUAUUAAAUGUAGACUAAUAA   2740

2.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (LOC4341543), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase RLK1(LOC4341543) coding protein psRNATarget
AK288806.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||||||||||||||=
targets:1276   AAAGUAUUAAACGUAGACUAAUAG   1299

2.0 Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence NA coding protein psRNATarget
AK100109.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||*|||||||
targets:1069   GAAGUAUUAAACGUAGUCUAAUAA   1092

2.5 Oryza sativa Japonica Group cDNA clone:J023004O08, full insert sequence NA coding protein psRNATarget
XM_015771923.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||*|||||||
targets:1813   GAAGUAUUAAACGUAGUCUAAUAA   1836

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g04980 (LOC4331063), transcript variant X1, mRNA uncharacterized protein At4g04980(LOC4331063) coding protein psRNATarget
XM_015771924.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||*|||||||
targets:1908   GAAGUAUUAAACGUAGUCUAAUAA   1931

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g04980 (LOC4331063), transcript variant X2, mRNA uncharacterized protein At4g04980(LOC4331063) coding protein psRNATarget
AK069221.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||||||*||||||||
targets:465   GAAGUAUUAAACGUAUACUAAUAA   488

2.5 Oryza sativa Japonica Group cDNA clone:J023018E21, full insert sequence NA coding protein psRNATarget
XM_015773694.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  |||*||||*|||||||||||||||
targets:705   GAACUAUUAAACGUAGACUAAUAA   728

1.0 PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA putative ubiquitin-like-specific protease 1B(LOC9268223) coding protein psRNATarget
AK099773.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||*|||||||
targets:583   GAAGUAUUAAACGUAGUCUAAUAA   606

2.5 Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence NA coding protein psRNATarget
AK099802.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  |||*||||*|||||||||||||||
targets:711   GAACUAUUAAACGUAGACUAAUAA   734

1.0 Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence NA coding protein psRNATarget
AK065510.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*|||||||*|||||||
targets:653   GAAGUAUUAAACGUAGUCUAAUAA   676

2.5 Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence NA coding protein psRNATarget
XM_015791223.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||||||*||||||||
targets:1623   GAAGUAUUAAACGUAUACUAAUAA   1646

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g01970 (LOC4344187), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g01970(LOC4344187) coding protein psRNATarget
AK288230.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  ||||||||*||||||*||||||||
targets:5786   GAAGUAUUAAACGUAAACUAAUAA   5809

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
AK287842.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*|||*|||||||||||
targets:961   UAAGUAUUAAACAUAGACUAAUAA   984

2.5 Oryza sativa Japonica Group cDNA, clone: J065194J09, full insert sequence NA coding protein psRNATarget
XM_015775081.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*|||*|||||||||||
targets:982   UAAGUAUUAAACAUAGACUAAUAA   1005

2.5 PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA methylesterase 3(LOC4324570) coding protein psRNATarget
XM_015772097.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||||||*||||||||
targets:1779   AAAGUAUUAAACGUAAACUAAUAA   1802

2.5 PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA cinnamate beta-D-glucosyltransferase(LOC4328553) coding protein psRNATarget
AK107289.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*|||||||*|||||||
targets:1937   UAAGUAUUAAACGUAGUCUAAUAA   1960

2.5 Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence NA coding protein psRNATarget
AK072341.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*|||||||*|||||||
targets:2259   AAAGUAUUAAACGUAGUCUAAUAA   2282

2.5 Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence NA coding protein psRNATarget
AK288660.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *|||||||*||||*||||||||||
targets:2283   AAAGUAUUAAACGCAGACUAAUAA   2306

2.5 Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *=||||||*|||*|||||||||||
targets:2596   AGAGUAUUAAACAUAGACUAAUAA   2619

2.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK288241.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *=||||||*|||*|||||||||||
targets:534   AGAGUAUUAAACAUAGACUAAUAA   557

2.5 Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence NA coding protein psRNATarget
XM_015761747.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  |||*||||*|||||||*|||||||
targets:1551   GAAAUAUUAAACGUAGUCUAAUAA   1574

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327896 (LOC4327896), mRNA uncharacterized LOC4327896(LOC4327896) coding protein psRNATarget
AK101996.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  |||*||||*|||||||*|||||||
targets:1558   GAAAUAUUAAACGUAGUCUAAUAA   1581

2.5 Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence NA coding protein psRNATarget
AK288236.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  |||*||||*|||*|||||||||||
targets:1703   GAAAUAUUAAACAUAGACUAAUAA   1726

2.5 Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence NA coding protein psRNATarget
AK287930.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  |||*||||*|||||||*|||||||
targets:2317   GAAAUAUUAAACGUAGUCUAAUAA   2340

2.5 Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence NA coding protein psRNATarget
AK059380.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:427   UAAAUAUUAAACGUAGACUAUUAA   450

2.5 Oryza sativa Japonica Group cDNA clone:001-026-G01, full insert sequence NA coding protein psRNATarget
AK107903.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:507   UAAAUAUUAAACGUAGACUAUUAA   530

2.5 Oryza sativa Japonica Group cDNA clone:002-134-F10, full insert sequence NA coding protein psRNATarget
CT837623.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:521   UAAAUAUUAAACGUAGACUAUUAA   544

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence NA coding protein psRNATarget
XM_015766175.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:1021   UAAAUAUUAAACGUAGACUAUUAA   1044

2.5 PREDICTED: Oryza sativa Japonica Group putative methyltransferase DDB_G0268948 (LOC4325584), mRNA putative methyltransferase DDB_G0268948(LOC4325584) coding protein psRNATarget
CT831158.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:582   UAAAUAUUAAACGUAGACUAUUAA   605

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence NA coding protein psRNATarget
AK288202.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:1008   UAAAUAUUAAACGUAGACUAUUAA   1031

2.5 Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence NA coding protein psRNATarget
AK288164.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:1008   UAAAUAUUAAACGUAGACUAUUAA   1031

2.5 Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence NA coding protein psRNATarget
AK064790.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:2285   UAAAUAUUAAACGUAGACUAUUAA   2308

2.5 Oryza sativa Japonica Group cDNA clone:J013000C06, full insert sequence NA coding protein psRNATarget
XM_015777574.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:2300   UAAAUAUUAAACGUAGACUAUUAA   2323

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334447 (LOC4334447), mRNA uncharacterized LOC4334447(LOC4334447) coding protein psRNATarget
AK288638.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:244   UAAAUAUUAAACGUAGACUAUUAA   267

2.5 Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence NA coding protein psRNATarget
CT834429.1
ncRNA:24   CUUCAUAAAUUGCAUCUGAUUAUU   1
  *||*||||*|||||||||||*|||
targets:1307   UAAAUAUUAAACGUAGACUAUUAA   1330

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence NA coding protein psRNATarget
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