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BaseInfo

ncRNA ID	novel_osa_miR3107
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:18656535-18656594 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR1555751;SRR2099568;SRR2099745;SRR2099746;SRR4407954;SRR4407957;SRR1556016;SRR4407958;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	37 - AAACGAUUUGGUACUGUGAGGUAU - 60
Stem-loop(if miRNA)	--U                    --A   CA    CCUUAUGGUACCAAAUCGUU   GAU  A    ||||||||||||||||||||   |||    GGAGUGUCAUGGUUUAGCAA   CUA  A UAU                    AGG   UC
Stem-loop sequence	UCCUUAUGGUACCAAAUCGUUAGAUCAAACUAUCGGAAACGAUUUGGUACUGUGAGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015758597.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||||||| targets:868   AUACCUCACGGUACCAAAUCGUUU   891 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable glutathione S-transferase GSTU6 (LOC4349191), mRNA	probable glutathione S-transferase GSTU6(LOC4349191)	coding protein	psRNATarget
AK059726.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||||||| targets:871   AUACCUCACGGUACCAAAUCGUUU   894 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-201-C07, full insert sequence	NA	coding protein	psRNATarget
CT833476.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||||||| targets:961   AUACCUCACGGUACCAAAUCGUUU   984 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072I05, full insert sequence	NA	coding protein	psRNATarget
AF402801.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||||||| targets:887   AUACCUCACGGUACCAAAUCGUUU   910 Target Full Sequence	1.0	Oryza sativa (japonica cultivar-group) clone S14053 putative glutathione S-transferase OsGSTU14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||=|||| targets:648   AUACCUCACGGUACCAAAUUGUUU   671 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
XM_015779655.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||||||=|||||||||| targets:1492   GUACCUCACAGUAUCAAAUCGUUU   1515 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
AK287529.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||=|||| targets:159   AUACCUCACGGUACCAAAUUGUUU   182 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   |||||||||=|||||||||=|||| targets:159   AUACCUCACGGUACCAAAUUGUUU   182 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
XM_015773751.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=|||||||||=|||||||||| targets:600   GUAUCUCACAGUAUCAAAUCGUUU   623 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cell number regulator 10 (LOC4334660), mRNA	cell number regulator 10(LOC4334660)	coding protein	psRNATarget
LQ236069.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =|||=||||=||||=||||||||| targets:6   GUACUUCACGGUACUAAAUCGUUU   29 Target Full Sequence	2.5	Sequence 2064 from Patent EP2985353	NA	coding protein	psRNATarget
HI403939.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =|||=||||=||||=||||||||| targets:6   GUACUUCACGGUACUAAAUCGUUU   29 Target Full Sequence	2.5	Sequence 2064 from Patent EP2074227	NA	coding protein	psRNATarget
JB164400.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =|||=||||=||||=||||||||| targets:6   GUACUUCACGGUACUAAAUCGUUU   29 Target Full Sequence	2.5	Sequence 2064 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236402.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:19   GUAUCUUACGGUACCAAAUCGUUU   42 Target Full Sequence	2.0	Sequence 2397 from Patent EP2985353	NA	coding protein	psRNATarget
JB164733.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:19   GUAUCUUACGGUACCAAAUCGUUU   42 Target Full Sequence	2.0	Sequence 2397 from Patent EP2559767	NA	coding protein	psRNATarget
HI404272.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:19   GUAUCUUACGGUACCAAAUCGUUU   42 Target Full Sequence	2.0	Sequence 2397 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236401.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:22   GUAUCUUACGGUACCAAAUCGUUU   45 Target Full Sequence	2.0	Sequence 2396 from Patent EP2985353	NA	coding protein	psRNATarget
HI404271.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:22   GUAUCUUACGGUACCAAAUCGUUU   45 Target Full Sequence	2.0	Sequence 2396 from Patent EP2074227	NA	coding protein	psRNATarget
JB164732.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:22   GUAUCUUACGGUACCAAAUCGUUU   45 Target Full Sequence	2.0	Sequence 2396 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015756307.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||=||=||=|||||||||||||| targets:952   GUAUCUUACGGUACCAAAUCGUUU   975 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group purine permease 3 (LOC4347321), transcript variant X2, mRNA	purine permease 3(LOC4347321)	coding protein	psRNATarget
LQ236290.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||=||||||||||*||| targets:6   GUACCUCACGGUACCAAAUCAUUU   29 Target Full Sequence	2.5	Sequence 2285 from Patent EP2985353	NA	coding protein	psRNATarget
HI404160.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||=||||||||||*||| targets:6   GUACCUCACGGUACCAAAUCAUUU   29 Target Full Sequence	2.5	Sequence 2285 from Patent EP2074227	NA	coding protein	psRNATarget
JB164621.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||=||||||||||*||| targets:6   GUACCUCACGGUACCAAAUCAUUU   29 Target Full Sequence	2.5	Sequence 2285 from Patent EP2559767	NA	coding protein	psRNATarget
HI404159.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||=||||||||||*||| targets:19   GUACCUCACGGUACCAAAUCAUUU   42 Target Full Sequence	2.5	Sequence 2284 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236289.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||=||||||||||*||| targets:19   GUACCUCACGGUACCAAAUCAUUU   42 Target Full Sequence	2.5	Sequence 2284 from Patent EP2985353	NA	coding protein	psRNATarget
JB164620.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||||||=||||||||||*||| targets:19   GUACCUCACGGUACCAAAUCAUUU   42 Target Full Sequence	2.5	Sequence 2284 from Patent EP2559767	NA	coding protein	psRNATarget
HI403982.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||*=||||||||||||||||| targets:38   GUACCCUACAGUACCAAAUCGUUU   61 Target Full Sequence	2.0	Sequence 2107 from Patent EP2074227	NA	coding protein	psRNATarget
JB164443.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||*=||||||||||||||||| targets:38   GUACCCUACAGUACCAAAUCGUUU   61 Target Full Sequence	2.0	Sequence 2107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236112.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||||*=||||||||||||||||| targets:38   GUACCCUACAGUACCAAAUCGUUU   61 Target Full Sequence	2.0	Sequence 2107 from Patent EP2985353	NA	coding protein	psRNATarget
AK063705.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =|||||||||*|||=||||||||| targets:512   GUACCUCACAUUACUAAAUCGUUU   535 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
EF626940.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =|||||||||*|||=||||||||| targets:1018   GUACCUCACAUUACUAAAUCGUUU   1041 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =|||||||||*|||=||||||||| targets:1493   GUACCUCACAUUACUAAAUCGUUU   1516 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
LQ236135.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||*||*||=|||||||||||||| targets:1   GUAACUGACGGUACCAAAUCGUUU   24 Target Full Sequence	2.0	Sequence 2130 from Patent EP2985353	NA	coding protein	psRNATarget
JB164466.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||*||*||=|||||||||||||| targets:1   GUAACUGACGGUACCAAAUCGUUU   24 Target Full Sequence	2.0	Sequence 2130 from Patent EP2559767	NA	coding protein	psRNATarget
HI404005.1	ncRNA:24   UAUGGAGUGUCAUGGUUUAGCAAA   1   =||*||*||=|||||||||||||| targets:1   GUAACUGACGGUACCAAAUCGUUU   24 Target Full Sequence	2.0	Sequence 2130 from Patent EP2074227	NA	coding protein	psRNATarget