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BaseInfo

ncRNA ID	novel_osa_miR3106
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:5275550-5275722 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR1738224
Length	24
Mature sequence(if miRNA)	150 - AUUUCCGUGUCCAACUUUGACUGU - 173
Stem-loop(if miRNA)	--               -                  A     UUUUUUUAUAAUUC UAUUUUCAUUGUUGUUAGAUGAUAAAACAU   AUUUCCGUGUCCAAC UUUGACUGUUCGUCUUAU UGAAA              G                              G   ||||||||||||||| |||||||||||||||||| |||||              |                              A   UAAAGGCACAGGUUG AAAUUGGCAGGCAGAAUA ACUUU              U                              U AC               C                  A     -UUAAUCUUUUUUU AAUUUUUCUGUUCAGUGCGAAUUUUAUAAU
Stem-loop sequence	AUUUCCGUGUCCAACUUUGACUGUUCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAAGCGUGACUUGUCUUUUUAAUUUUUUUUCUAAUUUUUCAAAUAAGACGGACGGUUAAACGUUGGACACGGAAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242028.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||||||||||||||||||*|||| targets:1620   ACAGUCAAAGUUGGACACGAAAAU   1643 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||||||||||||||||||*|||| targets:1731   ACAGUCAAAGUUGGACACGAAAAU   1754 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||||||||||||||||||*|||| targets:1737   ACAGUCAAAGUUGGACACGAAAAU   1760 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||||||||||||||||||*|||| targets:1743   ACAGUCAAAGUUGGACACGAAAAU   1766 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
CT827968.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCCUUUA   1   ||=||||||-||||||||||||||| targets:467   ACGGUCAAACGUUGGACACGGAAAU   491 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
XM_015759207.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCCUUUA   1   ||=||||||-||||||||||||||| targets:58   ACGGUCAAACGUUGGACACGGAAAU   82 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
AK242553.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||||||||*|||||||||||||* targets:325   ACAGUCAAAAUUGGACACGGAAAC   348 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCCUUUA   1   ||=||||||-||||||||||||||* targets:1251   ACGGUCAAACGUUGGACACGGAAAC   1275 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
XM_015787694.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCCUUUA   1   ||=||||||-||||||||||||||* targets:1497   ACGGUCAAACGUUGGACACGGAAAC   1521 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
AK071262.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCCUUUA   1   ||=||||||-||||||||||||||* targets:1379   ACGGUCAAACGUUGGACACGGAAAC   1403 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
LQ236000.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||*||||||||||=||||||||* targets:170   ACAAUCAAAGUUGGGCACGGAAAA   193 Target Full Sequence	2.5	Sequence 1995 from Patent EP2985353	NA	coding protein	psRNATarget
HI403870.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||*||||||||||=||||||||* targets:170   ACAAUCAAAGUUGGGCACGGAAAA   193 Target Full Sequence	2.5	Sequence 1995 from Patent EP2074227	NA	coding protein	psRNATarget
JB164331.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |||*||||||||||=||||||||* targets:170   ACAAUCAAAGUUGGGCACGGAAAA   193 Target Full Sequence	2.5	Sequence 1995 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015791114.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |=|||||||*|||||||||||||* targets:4109   AUAGUCAAAAUUGGACACGGAAAC   4132 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X2, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
XM_015791113.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |=|||||||*|||||||||||||* targets:4141   AUAGUCAAAAUUGGACACGGAAAC   4164 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X1, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
AK100615.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   |=|||||||*|||||||||||||* targets:4218   AUAGUCAAAAUUGGACACGGAAAC   4241 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023108B01, full insert sequence	NA	coding protein	psRNATarget
HI404421.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   ||=*||||||||||=||||||||* targets:171   ACGAUCAAAGUUGGGCACGGAAAA   194 Target Full Sequence	2.5	Sequence 2546 from Patent EP2074227	NA	coding protein	psRNATarget
JB164882.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   ||=*||||||||||=||||||||* targets:171   ACGAUCAAAGUUGGGCACGGAAAA   194 Target Full Sequence	2.5	Sequence 2546 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236551.1	ncRNA:24   UGUCAGUUUCAACCUGUGCCUUUA   1   ||=*||||||||||=||||||||* targets:171   ACGAUCAAAGUUGGGCACGGAAAA   194 Target Full Sequence	2.5	Sequence 2546 from Patent EP2985353	NA	coding protein	psRNATarget
AK288762.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCCUUUA   1   ||||----|||||*|||||||||||||* targets:1049   ACAGAUGAUCAAAAUUGGACACGGAAAC   1076 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK068180.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCCUUUA   1   |*||*||||-||||||||||||||| targets:458   AAAGACAAACGUUGGACACGGAAAU   482 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013135E14, full insert sequence	NA	coding protein	psRNATarget