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BaseInfo

ncRNA ID novel_osa_miR3105
Species Oryza sativa
Class miRNA
Genome position Chr9:7088898-7088951 [-]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2040387;SRR2040388;SRR2857735
Length 24
Mature sequence(if miRNA) 1 - AUCCAGAUUCGUUGUACUAUGAAA - 24
Stem-loop(if miRNA) --      G           A  CAUC
  UCAUAG ACAAUGAAUCU GA    C
  |||||| ||||||||||| ||
  AGUAUC UGUUGCUUAGA CU    U
AA      A           C  AUCU
Stem-loop sequence UCAUAGGACAAUGAAUCUAGACAUCCUUCUAUCCAGAUUCGUUGUACUAUGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288458.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *||||||||||||=||||||||||
targets:354   CUUCAUAGUACAAUGAAUCUGGAU   377

1.5 Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence NA coding protein psRNATarget
JB164996.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||||||*|||||||||||||||*
targets:47   UUUCAUACUACAACGAAUCUGGAC   70

2.0 Sequence 2660 from Patent EP2559767 NA coding protein psRNATarget
LQ236665.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||||||*|||||||||||||||*
targets:47   UUUCAUACUACAACGAAUCUGGAC   70

2.0 Sequence 2660 from Patent EP2985353 NA coding protein psRNATarget
HI404535.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||||||*|||||||||||||||*
targets:47   UUUCAUACUACAACGAAUCUGGAC   70

2.0 Sequence 2660 from Patent EP2074227 NA coding protein psRNATarget
AK071898.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|=||||||||||||||||||||
targets:2685   CAUUAUAGUACAACGAAUCUGGAU   2708

0.0 Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence NA coding protein psRNATarget
XM_015764610.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|=||||||||||||||||||||
targets:2701   CAUUAUAGUACAACGAAUCUGGAU   2724

0.0 PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA BTB/POZ domain-containing protein NPY4(LOC4352652) coding protein psRNATarget
HI404290.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|||||||||||=|||||||||*
targets:22   CAUCAUAGUACAAUGAAUCUGGAC   45

2.5 Sequence 2415 from Patent EP2074227 NA coding protein psRNATarget
LQ236420.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|||||||||||=|||||||||*
targets:22   CAUCAUAGUACAAUGAAUCUGGAC   45

2.5 Sequence 2415 from Patent EP2985353 NA coding protein psRNATarget
JB164751.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|||||||||||=|||||||||*
targets:22   CAUCAUAGUACAAUGAAUCUGGAC   45

2.5 Sequence 2415 from Patent EP2559767 NA coding protein psRNATarget
HI403814.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||=|*|||=|||||||||||||*
targets:44   UUUUACAGUGCAACGAAUCUGGAC   67

3.0 Sequence 1939 from Patent EP2074227 NA coding protein psRNATarget
JB164275.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||=|*|||=|||||||||||||*
targets:44   UUUUACAGUGCAACGAAUCUGGAC   67

3.0 Sequence 1939 from Patent EP2559767 NA coding protein psRNATarget
LQ235944.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||=|*|||=|||||||||||||*
targets:44   UUUUACAGUGCAACGAAUCUGGAC   67

3.0 Sequence 1939 from Patent EP2985353 NA coding protein psRNATarget
AK070979.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*|=||||||=||||||||||||*
targets:2270   UAUUAUAGUAUAACGAAUCUGGAA   2293

2.0 Oryza sativa Japonica Group cDNA clone:J023073D05, full insert sequence NA coding protein psRNATarget
XM_015764276.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*|=||||||=||||||||||||*
targets:2087   UAUUAUAGUAUAACGAAUCUGGAA   2110

2.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015764277.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*|=||||||=||||||||||||*
targets:2124   UAUUAUAGUAUAACGAAUCUGGAA   2147

2.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015764274.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*|=||||||=||||||||||||*
targets:2130   UAUUAUAGUAUAACGAAUCUGGAA   2153

2.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015764275.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*|=||||||=||||||||||||*
targets:2148   UAUUAUAGUAUAACGAAUCUGGAA   2171

2.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X2, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015778607.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||||||||*
targets:1061   AUUC-UAGUACAACGAAUCUGGAC   1083

1.0 PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA anthocyanidin reductase(LOC4337098) coding protein psRNATarget
XM_015792519.1
ncRNA:24   AAAGUA-UCAUGUUGCUUAGACCUA   1
  |||==|-||*|||||||||||||||
targets:363   UUUUGUUAGCACAACGAAUCUGGAU   387

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343682 (LOC4343682), mRNA uncharacterized LOC4343682(LOC4343682) coding protein psRNATarget
JB164416.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:34   UAACCUAGUACAACGAAUCUGGAU   57

0.0 Sequence 2080 from Patent EP2559767 NA coding protein psRNATarget
HI403955.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:34   UAACCUAGUACAACGAAUCUGGAU   57

0.0 Sequence 2080 from Patent EP2074227 NA coding protein psRNATarget
LQ236085.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:34   UAACCUAGUACAACGAAUCUGGAU   57

0.0 Sequence 2080 from Patent EP2985353 NA coding protein psRNATarget
CT834783.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*||||||||||||||||||*||*
targets:570   UAUCAUAGUACAACGAAUCUAGAC   593

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K12, full insert sequence NA coding protein psRNATarget
XM_015775668.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  ||||*||||||*|||||||||||*
targets:1585   UUUCCUAGUACUACGAAUCUGGAC   1608

2.5 PREDICTED: Oryza sativa Japonica Group RNA pseudouridine synthase 5 (LOC4332490), mRNA RNA pseudouridine synthase 5(LOC4332490) coding protein psRNATarget
AK111992.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||||||||||||*
targets:704   CCUCCUAGUACAACGAAUCUGGAC   727

1.0 Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence NA coding protein psRNATarget
XM_015789120.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||||||||||||*
targets:1265   CCUCCUAGUACAACGAAUCUGGAC   1288

1.0 PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112) coding protein psRNATarget
XM_015789119.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||||||||||||*
targets:1360   CCUCCUAGUACAACGAAUCUGGAC   1383

1.0 PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112) coding protein psRNATarget
AK102332.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||||||||||||*
targets:1764   CCUCCUAGUACAACGAAUCUGGAC   1787

1.0 Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence NA coding protein psRNATarget
XM_015784597.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411

0.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
XM_015784596.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411

0.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
XM_015784593.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411

0.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
XM_015784595.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |**|*|||||||||||||||||||
targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411

0.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
CT834276.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*||||||
targets:1791   AUUC-UAGUACAACGAACCUGGAU   1813

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F09, full insert sequence NA coding protein psRNATarget
AK288631.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||*||||||||||||
targets:4124   AUUC-UAGUACUACGAAUCUGGAU   4146

1.5 Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence NA coding protein psRNATarget
AK288602.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  ||||-||*|||||||||||||||*
targets:778   UUUC-UAAUACAACGAAUCUGGAC   800

2.0 Oryza sativa Japonica Group cDNA, clone: J090052H23, full insert sequence NA coding protein psRNATarget
XM_015758930.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||=|||||||||*
targets:1111   CGUCCUAGUACAAUGAAUCUGGAC   1134

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X4, mRNA uncharacterized LOC4348034(Os10g0130500) coding protein psRNATarget
XM_015758929.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||=|||||||||*
targets:1660   CGUCCUAGUACAAUGAAUCUGGAC   1683

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X3, mRNA uncharacterized LOC4348034(Os10g0130500) coding protein psRNATarget
AK242875.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||--||||||*||||||||||||
targets:1782   UUU--UAGUACCACGAAUCUGGAU   1803

1.5 Oryza sativa Japonica Group cDNA, clone: J090077K21, full insert sequence NA coding protein psRNATarget
AK120243.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*||||||||=|||||||||*
targets:6281   CGUCCUAGUACAAUGAAUCUGGAC   6304

2.5 Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence NA coding protein psRNATarget
LQ236225.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-|||||=|||||||||*|||
targets:20   AUUC-UAGUAUAACGAAUCUAGAU   42

2.5 Sequence 2220 from Patent EP2985353 NA coding protein psRNATarget
LQ236225.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-|||||=|||||||||*|||
targets:49   AUUC-UAGUAUAACGAAUCUAGAU   71

2.5 Sequence 2220 from Patent EP2985353 NA coding protein psRNATarget
JB164556.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-|||||=|||||||||*|||
targets:20   AUUC-UAGUAUAACGAAUCUAGAU   42

2.5 Sequence 2220 from Patent EP2559767 NA coding protein psRNATarget
JB164556.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-|||||=|||||||||*|||
targets:49   AUUC-UAGUAUAACGAAUCUAGAU   71

2.5 Sequence 2220 from Patent EP2559767 NA coding protein psRNATarget
HI404095.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-|||||=|||||||||*|||
targets:20   AUUC-UAGUAUAACGAAUCUAGAU   42

2.5 Sequence 2220 from Patent EP2074227 NA coding protein psRNATarget
HI404095.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-|||||=|||||||||*|||
targets:49   AUUC-UAGUAUAACGAAUCUAGAU   71

2.5 Sequence 2220 from Patent EP2074227 NA coding protein psRNATarget
AK288796.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|**|||||=|||||||||||||
targets:373   CCUACUAGUAUAACGAAUCUGGAU   396

1.0 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
JB164412.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|=|||*||=||||||||||||*
targets:22   CAUUAUAUUAUAACGAAUCUGGAC   45

3.0 Sequence 2076 from Patent EP2559767 NA coding protein psRNATarget
HI403951.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|=|||*||=||||||||||||*
targets:22   CAUUAUAUUAUAACGAAUCUGGAC   45

3.0 Sequence 2076 from Patent EP2074227 NA coding protein psRNATarget
LQ236081.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **|=|||*||=||||||||||||*
targets:22   CAUUAUAUUAUAACGAAUCUGGAC   45

3.0 Sequence 2076 from Patent EP2985353 NA coding protein psRNATarget
JB164201.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*|||*|=|||||||||||||
targets:32   CAUCCUAGGAUAACGAAUCUGGAU   55

2.0 Sequence 1865 from Patent EP2559767 NA coding protein psRNATarget
LQ235870.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*|||*|=|||||||||||||
targets:32   CAUCCUAGGAUAACGAAUCUGGAU   55

2.0 Sequence 1865 from Patent EP2985353 NA coding protein psRNATarget
HI403740.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||*|||*|=|||||||||||||
targets:32   CAUCCUAGGAUAACGAAUCUGGAU   55

2.0 Sequence 1865 from Patent EP2074227 NA coding protein psRNATarget
CT830398.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||--|||||=*||||||||||||
targets:357   UUU--UAGUAUUACGAAUCUGGAU   378

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041E02, full insert sequence NA coding protein psRNATarget
AK101666.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*||=|||*|||||||||||*|||
targets:1460   UAUCGUAGGACAACGAAUCUAGAU   1483

2.5 Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence NA coding protein psRNATarget
AK062145.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  **||-|||||||||||||*|||||
targets:163   AAUC-UAGUACAACGAAUAUGGAU   185

1.5 Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence NA coding protein psRNATarget
AK120132.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:1886   AUUC-UAGUACAACGAACCUGGAC   1908

2.5 Oryza sativa Japonica Group cDNA clone:J013027B10, full insert sequence NA coding protein psRNATarget
XM_015780717.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:1887   AUUC-UAGUACAACGAACCUGGAC   1909

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X5, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780715.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:1964   AUUC-UAGUACAACGAACCUGGAC   1986

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X3, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780713.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:1981   AUUC-UAGUACAACGAACCUGGAC   2003

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X1, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780718.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:1994   AUUC-UAGUACAACGAACCUGGAC   2016

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X6, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780716.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:2177   AUUC-UAGUACAACGAACCUGGAC   2199

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X4, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780714.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  *|||-||||||||||||*|||||*
targets:2194   AUUC-UAGUACAACGAACCUGGAC   2216

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X2, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
AK241555.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |||--||||||*|||||||||||*
targets:156   UUU--UAGUACUACGAAUCUGGAC   177

2.5 Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence NA coding protein psRNATarget
AK107672.1
ncRNA:24   AAAGUAUCAUGUUGCUUAGACCUA   1
  |*||*||||||*|||||||||||*
targets:877   UAUCCUAGUACUACGAAUCUGGAC   900

2.5 Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence NA coding protein psRNATarget