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BaseInfo

ncRNA ID	novel_osa_miR3104
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:14039744-14039830 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	22
Mature sequence(if miRNA)	1 - UAACCGGGACUAAAGAUCAUUU - 22
Stem-loop(if miRNA)	--                     UGUU   -A    GA UAAAGA   AUGAUUUUUAGUCCCGGUUGG    ACC  ACAG  C      U   |||||||||||||||||||||    |||  ||||  |      C   UACUAGAAAUCAGGGCCAAUU    UGG  UGUC  G      A UU                     --UU   GG    -G UAAAAU
Stem-loop sequence	AUGAUUUUUAGUCCCGGUUGGUGUUACCAACAGGACUAAAGAUCAUAAAAUGGCUGUGGGGUUUUUAACCGGGACUAAAGAUCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK061057.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||||||||||||||||||||| targets:244   AAAUGAUCUUUAGUCCCGGUUA   265 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||||||||||||||||||||| targets:2377   AAAUGAUCUUUAGUCCCGGUUA   2398 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=|||*|=|||||||||||||* targets:2458   AGAUGCUUUUUAGUCCCGGUUU   2479 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||||||||||||||||||||= targets:421   AAAUGAUCUUUAGUCCCGGUUG   442 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:22   UUUAC-UAGAAAUCAGGGCCAAU   1   |=|||-||||||||||||||||| targets:638   AGAUGGAUCUUUAGUCCCGGUUA   660 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *=|*|||||||||||||||||= targets:551   CGAGGAUCUUUAGUCCCGGUUG   572 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK105552.1	ncRNA:22   UUUA-CUAGAAAUCAGGGCCAAU   1   ||||-|||||||||||||||||| targets:1268   AAAUAGAUCUUUAGUCCCGGUUA   1290 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *||||||||||||||||||||= targets:139   UAAUGAUCUUUAGUCCCGGUUG   160 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
XM_015779829.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=|||||=|||||||||||||= targets:1587   AGAUGAUUUUUAGUCCCGGUUG   1608 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ||||*||||||||||||||||* targets:1645   AAAUCAUCUUUAGUCCCGGUUC   1666 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *=|*|||||||||||||||||= targets:1696   CGAGGAUCUUUAGUCCCGGUUG   1717 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
JB164747.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   =*|||||||||||||||||||| targets:38   GCAUGAUCUUUAGUCCCGGUUA   59 Target Full Sequence	0.0	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   =*|||||||||||||||||||| targets:38   GCAUGAUCUUUAGUCCCGGUUA   59 Target Full Sequence	0.0	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI404286.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   =*|||||||||||||||||||| targets:38   GCAUGAUCUUUAGUCCCGGUUA   59 Target Full Sequence	0.0	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
AK289098.1	ncRNA:22   UUUA-CUAGAAAUCAGGGCCAAU   1   ||||-|||||||||||||||||= targets:142   AAAUAGAUCUUUAGUCCCGGUUG   164 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:22   UUUA-CUAGAAAUCAGGGCCAAU   1   ||||-|||||||||||||||||= targets:233   AAAUAGAUCUUUAGUCCCGGUUG   255 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
JB164982.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ||||||||||||||||||*||= targets:119   AAAUGAUCUUUAGUCCCGAUUG   140 Target Full Sequence	2.5	Sequence 2646 from Patent EP2559767	NA	coding protein	psRNATarget
HI404521.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ||||||||||||||||||*||= targets:119   AAAUGAUCUUUAGUCCCGAUUG   140 Target Full Sequence	2.5	Sequence 2646 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236651.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ||||||||||||||||||*||= targets:119   AAAUGAUCUUUAGUCCCGAUUG   140 Target Full Sequence	2.5	Sequence 2646 from Patent EP2985353	NA	coding protein	psRNATarget
AK066662.1	ncRNA:22   UUUAC-UAGAAAUCAGGGCCAAU   1   |||||-||||||||||||||||* targets:650   AAAUGUAUCUUUAGUCCCGGUUC   672 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||||||||*|||||||||||= targets:1383   AAAUGAUCUCUAGUCCCGGUUG   1404 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774888.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||*||||||||||||||||* targets:1437   AGAUCAUCUUUAGUCCCGGUUC   1458 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||||||||*|||||||||||= targets:1389   AAAUGAUCUCUAGUCCCGGUUG   1410 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||*||||||||||||||||* targets:1443   AGAUCAUCUUUAGUCCCGGUUC   1464 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288859.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||*|||||||||||||||||= targets:2193   AAAAGAUCUUUAGUCCCGGUUG   2214 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ***|*||||||||||||||||= targets:925   UUUUAAUCUUUAGUCCCGGUUG   946 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK288796.1	ncRNA:22   UUUA-CUAGAAAUCAGGGCCAAU   1   |=||-|||||||||||||||||= targets:1825   AGAUCGAUCUUUAGUCCCGGUUG   1847 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||*||=|||||||||||||| targets:2345   AGAUUAUUUUUAGUCCCGGUUA   2366 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||*||||||||||||||||* targets:36   AGAUCAUCUUUAGUCCCGGUUC   57 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *|||*||||||||||||||||= targets:1370   CAAUUAUCUUUAGUCCCGGUUG   1391 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
XM_015755884.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||*||=|||||||||||||* targets:1320   AGAUCAUUUUUAGUCCCGGUUC   1341 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288438.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||*||=|||||||||||||* targets:1349   AGAUCAUUUUUAGUCCCGGUUC   1370 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |**||||||||||||||||||= targets:43   AUUUGAUCUUUAGUCCCGGUUG   64 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
XM_015759969.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ==||*||||||||||||||||* targets:1867   GGAUCAUCUUUAGUCCCGGUUC   1888 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK121178.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *=|*|||||||||||||||||= targets:1904   UGACGAUCUUUAGUCCCGGUUG   1925 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015759968.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ==||*||||||||||||||||* targets:3365   GGAUCAUCUUUAGUCCCGGUUC   3386 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK065634.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |||*|*|=|||||||||||||| targets:1818   AAACGCUUUUUAGUCCCGGUUA   1839 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence	NA	coding protein	psRNATarget
JB164979.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *==||||||||||*|||||||= targets:39   CGGUGAUCUUUAGCCCCGGUUG   60 Target Full Sequence	2.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
HI404518.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *==||||||||||*|||||||= targets:39   CGGUGAUCUUUAGCCCCGGUUG   60 Target Full Sequence	2.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *==||||||||||*|||||||= targets:39   CGGUGAUCUUUAGCCCCGGUUG   60 Target Full Sequence	2.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
AK288544.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ****|||||||||||||||||= targets:1785   CCUAGAUCUUUAGUCCCGGUUG   1806 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   ****|||||||||||||||||= targets:1256   CUCGGAUCUUUAGUCCCGGUUG   1277 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288624.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   |=||**|||||||||||||||* targets:4834   AGAUAUUCUUUAGUCCCGGUUC   4855 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
AK288624.1	ncRNA:22   UUUACUAGAAAUCAGGGCCAAU   1   *|*|*|||||||||*||||||| targets:4949   CAUUUAUCUUUAGUACCGGUUA   4970 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget