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BaseInfo

ncRNA ID	novel_osa_miR3101
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:15798442-15798555 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040394
Length	21
Mature sequence(if miRNA)	94 - AAAAGAUCCAUCUCGUGAUUU - 114
Stem-loop(if miRNA)	--           A                   U    G      C   A   CUAC   AUCGCGAGAUG AUCUUUUGAGCCUAAUUAG CCAU AUUAGC AUA GUG    A   ||||||||||| ||||||||||||||||||| |||| |||||| ||| |||    A   UAGUGCUCUAC UAGAAAACUCGGAUUAAUU GGUA UAAUCG UGU CAC    U UU           C                   U    G      -   A   CCAA
Stem-loop sequence	AUCGCGAGAUGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGCUACAAUAACCCACAUGUGCUAAUGAUGGUUUAAUUAGGCUCAAAAGAUCCAUCUCGUGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072891.1	ncRNA:21   UUUAGUGCUCUACCUAGAAAA   1   |||||||||||||*||||||| targets:866   AAAUCACGAGAUGAAUCUUUU   886 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence	NA	coding protein	psRNATarget
CT834578.1	ncRNA:21   UUUAGUGCUCUACCUAGAAAA   1   ||||=||||||||*||||||| targets:919   AAAUUACGAGAUGAAUCUUUU   939 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN022I08, full insert sequence	NA	coding protein	psRNATarget
AK288192.1	ncRNA:21   UUUAGUGCUCUACCUAGAAAA   1   ||||=||||||||*||||||| targets:1844   AAAUUACGAGAUGAAUCUUUU   1864 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
AK288192.1	ncRNA:21   UUUAGUGCUCUACCUAGAAAA   1   |||||=|||||||*||||||| targets:2175   AAAUCGCGAGAUGAAUCUUUU   2195 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
XM_015775160.1	ncRNA:21   UUUAGUGCUCUACCUAGAAAA   1   =|||||=|||||||||||*|| targets:1456   GAAUCAUGAGAUGGAUCUAUU   1476 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group bromodomain and WD repeat-containing protein 1 (LOC9268022), transcript variant X2, mRNA	bromodomain and WD repeat-containing protein 1(LOC9268022)	coding protein	psRNATarget
XM_015775159.1	ncRNA:21   UUUAGUGCUCUACCUAGAAAA   1   =|||||=|||||||||||*|| targets:1564   GAAUCAUGAGAUGGAUCUAUU   1584 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group bromodomain and WD repeat-containing protein 1 (LOC9268022), transcript variant X1, mRNA	bromodomain and WD repeat-containing protein 1(LOC9268022)	coding protein	psRNATarget