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BaseInfo

ncRNA ID novel_osa_miR3100
Species Oryza sativa
Class miRNA
Genome position Chr9:13590864-13590917 [+]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2040397;SRR2857730;SRR2857733;SRR3123646;SRR1738228
Length 24
Mature sequence(if miRNA) 31 - GUCCAGAUUCGUAGUACUAGGAUG - 54
Stem-loop(if miRNA) --                        A
  UUCUAGUAUUAUGAAUCUGGACAU U
  ||||||||||||||||||||||||
  AGGAUCAUGAUGCUUAGACCUGUA G
GU                        U
Stem-loop sequence UUCUAGUAUUAUGAAUCUGGACAUAUGUAUGUCCAGAUUCGUAGUACUAGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK107672.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||||||||||||||||||
targets:877   UAUCCUAGUACUACGAAUCUGGAC   900

0.0 Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence NA coding protein psRNATarget
AK241555.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||==|||||||||||||||||||
targets:154   CAUUUUAGUACUACGAAUCUGGAC   177

0.0 Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence NA coding protein psRNATarget
AK288631.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=|||||||||||||||||||=
targets:4123   CAUUCUAGUACUACGAAUCUGGAU   4146

1.0 Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence NA coding protein psRNATarget
XM_015775668.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--|||||||||||||||||||||
targets:1583   CAUUUCCUAGUACUACGAAUCUGGAC   1608

0.0 PREDICTED: Oryza sativa Japonica Group RNA pseudouridine synthase 5 (LOC4332490), mRNA RNA pseudouridine synthase 5(LOC4332490) coding protein psRNATarget
LQ235678.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||||||*||||||||||||||||
targets:151   CAUCCUAAUACUACGAAUCUGGAC   174

1.0 Sequence 1673 from Patent EP2985353 NA coding protein psRNATarget
LQ235678.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*||*||||||||||=|||||
targets:9   CAUCAUAAUACUACGAAUUUGGAC   32

2.5 Sequence 1673 from Patent EP2985353 NA coding protein psRNATarget
HI403548.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||||||*||||||||||||||||
targets:151   CAUCCUAAUACUACGAAUCUGGAC   174

1.0 Sequence 1673 from Patent EP2074227 NA coding protein psRNATarget
HI403548.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*||*||||||||||=|||||
targets:9   CAUCAUAAUACUACGAAUUUGGAC   32

2.5 Sequence 1673 from Patent EP2074227 NA coding protein psRNATarget
JB164009.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||||||*||||||||||||||||
targets:151   CAUCCUAAUACUACGAAUCUGGAC   174

1.0 Sequence 1673 from Patent EP2559767 NA coding protein psRNATarget
JB164009.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*||*||||||||||=|||||
targets:9   CAUCAUAAUACUACGAAUUUGGAC   32

2.5 Sequence 1673 from Patent EP2559767 NA coding protein psRNATarget
AK288418.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||||||*||||||||||||||||
targets:886   CAUCCUAAUACUACGAAUCUGGAC   909

1.0 Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence NA coding protein psRNATarget
AK288418.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*||*||||||||||=|||||
targets:744   CAUCAUAAUACUACGAAUUUGGAC   767

2.5 Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence NA coding protein psRNATarget
AK063369.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||||||||||||*|||||||||
targets:986   CAUCCUAGUACUACAAAUCUGGAC   1009

1.5 Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence NA coding protein psRNATarget
XM_015794212.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||||||||||||*|||||||||
targets:1097   CAUCCUAGUACUACAAAUCUGGAC   1120

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA uncharacterized LOC4325579(LOC4325579) coding protein psRNATarget
AK063452.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||||||||||||=|||||||||=
targets:119   UAUCCUAGUACUAUGAAUCUGGAU   142

2.5 Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence NA coding protein psRNATarget
XM_015761638.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||||||||||||||||||*|||
targets:3909   CAUCCUAGUACUACGAAUCUAGAC   3932

1.5 PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA putative receptor protein kinase ZmPK1(LOC107278048) coding protein psRNATarget
JB164293.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=||||||||||||||||||*|
targets:9   CAUUCUAGUACUACGAAUCUGGUC   32

1.5 Sequence 1957 from Patent EP2559767 NA coding protein psRNATarget
LQ235962.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=||||||||||||||||||*|
targets:9   CAUUCUAGUACUACGAAUCUGGUC   32

1.5 Sequence 1957 from Patent EP2985353 NA coding protein psRNATarget
HI403832.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=||||||||||||||||||*|
targets:9   CAUUCUAGUACUACGAAUCUGGUC   32

1.5 Sequence 1957 from Patent EP2074227 NA coding protein psRNATarget
HI404552.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||||||||*|||||||||
targets:44   UAUCCUAGUACUACAAAUCUGGAC   67

1.5 Sequence 2677 from Patent EP2074227 NA coding protein psRNATarget
LQ236682.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||||||||*|||||||||
targets:44   UAUCCUAGUACUACAAAUCUGGAC   67

1.5 Sequence 2677 from Patent EP2985353 NA coding protein psRNATarget
JB165013.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||||||||*|||||||||
targets:44   UAUCCUAGUACUACAAAUCUGGAC   67

1.5 Sequence 2677 from Patent EP2559767 NA coding protein psRNATarget
AK287815.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||=||||||=|||||||=|||||
targets:1936   UAUUCUAGUAUUACGAAUUUGGAC   1959

2.5 Oryza sativa Japonica Group cDNA, clone: J065180O15, full insert sequence NA coding protein psRNATarget
AK107495.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||=|||||||||=|||||||||=
targets:930   UAUUCUAGUACUAUGAAUCUGGAU   953

2.5 Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence NA coding protein psRNATarget
XM_015759388.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||||=||||||||||||||*||
targets:417   CAUCCUGGUACUACGAAUCUGAAC   440

2.5 PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA ent-cassadiene C2-hydroxylase-like(LOC4348721) coding protein psRNATarget
AK288866.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||=|||||*|||||||||||||
targets:1900   CAUCUUAGUAGUACGAAUCUGGAC   1923

1.0 Oryza sativa Japonica Group cDNA, clone: J090078B06, full insert sequence NA coding protein psRNATarget
CT829763.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||=|||*||||||||||||||||
targets:973   UAUUCUAAUACUACGAAUCUGGAC   996

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence NA coding protein psRNATarget
XM_015778607.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||=|||||||*||||||||||||
targets:1060   UAUUCUAGUACAACGAAUCUGGAC   1083

1.5 PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA anthocyanidin reductase(LOC4337098) coding protein psRNATarget
CT830398.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||==|||||=||||||||||||=
targets:355   UAUUUUAGUAUUACGAAUCUGGAU   378

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041E02, full insert sequence NA coding protein psRNATarget
AK064924.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||=||*|||||||||||||||=
targets:2014   CAUCUUAAUACUACGAAUCUGGAU   2037

2.0 Oryza sativa Japonica Group cDNA clone:J013000N15, full insert sequence NA coding protein psRNATarget
AK119748.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||=||*|||||||||||||||=
targets:2191   CAUCUUAAUACUACGAAUCUGGAU   2214

2.0 Oryza sativa Japonica Group cDNA clone:002-165-F11, full insert sequence NA coding protein psRNATarget
XM_015785327.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||=||*|||||||||||||||=
targets:2247   CAUCUUAAUACUACGAAUCUGGAU   2270

2.0 PREDICTED: Oryza sativa Japonica Group phosphoinositide phospholipase C 2 (LOC4337686), mRNA phosphoinositide phospholipase C 2(LOC4337686) coding protein psRNATarget
AK072141.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||=||*|||||||||||||||=
targets:2814   CAUCUUAAUACUACGAAUCUGGAU   2837

2.0 Oryza sativa Japonica Group cDNA clone:J013122I07, full insert sequence NA coding protein psRNATarget
JB164318.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*|||||*|||||||||||||
targets:58   CAUCAUAGUAAUACGAAUCUGGAC   81

1.0 Sequence 1982 from Patent EP2559767 NA coding protein psRNATarget
HI403857.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*|||||*|||||||||||||
targets:58   CAUCAUAGUAAUACGAAUCUGGAC   81

1.0 Sequence 1982 from Patent EP2074227 NA coding protein psRNATarget
LQ235987.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*|||||*|||||||||||||
targets:58   CAUCAUAGUAAUACGAAUCUGGAC   81

1.0 Sequence 1982 from Patent EP2985353 NA coding protein psRNATarget
AK111992.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |*|||||||||*||||||||||||
targets:704   CCUCCUAGUACAACGAAUCUGGAC   727

1.5 Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence NA coding protein psRNATarget
XM_015789120.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |*|||||||||*||||||||||||
targets:1265   CCUCCUAGUACAACGAAUCUGGAC   1288

1.5 PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112) coding protein psRNATarget
XM_015789119.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |*|||||||||*||||||||||||
targets:1360   CCUCCUAGUACAACGAAUCUGGAC   1383

1.5 PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112) coding protein psRNATarget
AK102332.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |*|||||||||*||||||||||||
targets:1764   CCUCCUAGUACAACGAAUCUGGAC   1787

1.5 Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence NA coding protein psRNATarget
HI403955.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:32   CAUAACCUAGUACAACGAAUCUGGAU   57

2.5 Sequence 2080 from Patent EP2074227 NA coding protein psRNATarget
JB164416.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:32   CAUAACCUAGUACAACGAAUCUGGAU   57

2.5 Sequence 2080 from Patent EP2559767 NA coding protein psRNATarget
LQ236085.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:32   CAUAACCUAGUACAACGAAUCUGGAU   57

2.5 Sequence 2080 from Patent EP2985353 NA coding protein psRNATarget
AK066512.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||=|||*|||||||||||||||*
targets:976   UAUUCUAAUACUACGAAUCUGGAA   999

2.0 Oryza sativa Japonica Group cDNA clone:J013068C19, full insert sequence NA coding protein psRNATarget
XM_015784597.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:2386   CAUAACCUAGUACAACGAAUCUGGAU   2411

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
XM_015784596.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:2386   CAUAACCUAGUACAACGAAUCUGGAU   2411

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
XM_015784593.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:2386   CAUAACCUAGUACAACGAAUCUGGAU   2411

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
XM_015784595.1
ncRNA:24   GUA--GGAUCAUGAUGCUUAGACCUG   1
  |||--||||||||*|||||||||||=
targets:2386   CAUAACCUAGUACAACGAAUCUGGAU   2411

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514) coding protein psRNATarget
AK110747.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*|||||=|||||||||*|||
targets:490   CAUCAUAGUAUUACGAAUCUAGAC   513

2.5 Oryza sativa Japonica Group cDNA clone:002-170-G02, full insert sequence NA coding protein psRNATarget
XM_015778756.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=|||*|||||||||||||*||
targets:1361   CAUUCUACUACUACGAAUCUGAAC   1384

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL72 (LOC4335822), transcript variant X1, mRNA RING-H2 finger protein ATL72(LOC4335822) coding protein psRNATarget
AK108711.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||*|||||*|||||||||
targets:53   UAUCCUAGGACUACAAAUCUGGAC   76

2.5 Oryza sativa Japonica Group cDNA clone:002-150-A12, full insert sequence NA coding protein psRNATarget
XM_015770949.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||*|||||*|||||||||
targets:136   UAUCCUAGGACUACAAAUCUGGAC   159

2.5 PREDICTED: Oryza sativa Japonica Group ammonium transporter 3 member 3 (LOC4329628), transcript variant X2, mRNA ammonium transporter 3 member 3(LOC4329628) coding protein psRNATarget
XM_015770948.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||||||*|||||*|||||||||
targets:135   UAUCCUAGGACUACAAAUCUGGAC   158

2.5 PREDICTED: Oryza sativa Japonica Group ammonium transporter 3 member 3 (LOC4329628), transcript variant X1, mRNA ammonium transporter 3 member 3(LOC4329628) coding protein psRNATarget
AK242875.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||==||||||*|||||||||||=
targets:1780   UAUUUUAGUACCACGAAUCUGGAU   1803

2.5 Oryza sativa Japonica Group cDNA, clone: J090077K21, full insert sequence NA coding protein psRNATarget
XM_015763640.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  ||||*|||||=|||||||||*|||
targets:3177   CAUCAUAGUAUUACGAAUCUAGAC   3200

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9268419), mRNA pentatricopeptide repeat-containing protein At1g52620(LOC9268419) coding protein psRNATarget
XM_015770952.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =|||=|||*|||||||||||*|||
targets:1336   UAUCUUAGAACUACGAAUCUAGAC   1359

2.5 PREDICTED: Oryza sativa Japonica Group putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C (LOC4330019), mRNA putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C(LOC4330019) coding protein psRNATarget
AK071898.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=*||||||*|||||||||||=
targets:2685   CAUUAUAGUACAACGAAUCUGGAU   2708

2.5 Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence NA coding protein psRNATarget
XM_015764610.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  |||=*||||||*|||||||||||=
targets:2701   CAUUAUAGUACAACGAAUCUGGAU   2724

2.5 PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA BTB/POZ domain-containing protein NPY4(LOC4352652) coding protein psRNATarget
AK288796.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =||*=|||||||||||||||*|||
targets:560   UAUGUUAGUACUACGAAUCUAGAC   583

1.5 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
AK288362.1
ncRNA:24   GUAGGAUCAUGAUGCUUAGACCUG   1
  =*|||*||||||||||||||*|||
targets:2671   UUUCCCAGUACUACGAAUCUAGAC   2694

2.5 Oryza sativa Japonica Group cDNA, clone: J090025C16, full insert sequence NA coding protein psRNATarget
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