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BaseInfo

ncRNA ID	novel_osa_miR3097
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:4745589-4745760 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR3123651;SRR1738240
Length	24
Mature sequence(if miRNA)	149 - GGUCAAACGUUGGACACGGAAACU - 172
Stem-loop(if miRNA)	--     U                    A G    A     UUUU      UUACUAUUUUCAUUGUU      -U     A     AU   U   UUUUC UGUCCAACGUUUGACUGUUC U UUAU UGAAA    UUAUAA                 AUUAGA  GAUAA UCAUG  UAA G   ||||| |||||||||||||||||||| | |||| |||||    ||||||                 ||||||  ||||| |||||  |||   AAAGG ACAGGUUGCAAACUGGCAGG A AAUA AUUUU    AAUAUU                 UAAUUU  UUGUU AGUGC  AUU C UC     C                    C G    A     -UUU      ------------UUUUU      UU     C     GU   U
Stem-loop sequence	UUUUCUUGUCCAACGUUUGACUGUUCAUGUUAUAUGAAAUUUUUUAUAAUUACUAUUUUCAUUGUUAUUAGAUGAUAAAUCAUGAUUAAUGCUUUAUGCGUGACUUGUUUUUUUAAUUUUUUUUAUAAUUUUUUUAAAUAAGACGGACGGUCAAACGUUGGACACGGAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792473.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |||||||||||||||||||||||| targets:2588   AGUUUCCGUGUCCAACGUUUGACC   2611 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |||||||||||||||||||||||| targets:2602   AGUUUCCGUGUCCAACGUUUGACC   2625 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
CT832630.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||||||||||||||||||||||| targets:336   GGUUUCCGUGUCCAACGUUUGACC   359 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
CT832631.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||||||||||||||||||||||| targets:336   GGUUUCCGUGUCCAACGUUUGACC   359 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
XM_015784718.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||||||||||||||=|||||||= targets:1385   GGUUUCCGUGUCCAAUGUUUGACU   1408 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA	basic 7S globulin(LOC4326528)	coding protein	psRNATarget
AK070212.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |||||||*|||||||||||||||| targets:1277   AGUUUCCAUGUCCAACGUUUGACC   1300 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
XM_015759983.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||||||||||||||||||||== targets:3513   GGUUUCCGUGUCCAACGUUUGAUU   3536 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270101 (LOC9270101), transcript variant X4, mRNA	uncharacterized LOC9270101(LOC9270101)	coding protein	psRNATarget
AK120736.1	ncRNA:24   UCAA-----AGGCACAGGUUGCAAACUGG   1   *|||-----|||||||=|||||||||||| targets:2665   UGUUGGACAUCCGUGUUCAACGUUUGACC   2693 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||||||||*||||||||||||| targets:176   GGUUUCCGUGCCCAACGUUUGACC   199 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
CT828091.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |*||||||||||=||||||||||| targets:1567   AAUUUCCGUGUCUAACGUUUGACC   1590 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence	NA	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |*|||||||||||||||||||||= targets:400   AAUUUCCGUGUCCAACGUUUGACU   423 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
AK288529.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|*||||||||||||||||||||| targets:68   GGCUUCCGUGUCCAACGUUUGACC   91 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
AK109737.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   ||||||||||||||||*||||||* targets:1974   AGUUUCCGUGUCCAACAUUUGACA   1997 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-146-C11, full insert sequence	NA	coding protein	psRNATarget
AK103707.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||*|||||||||||||||||||= targets:1191   GGUCUCCGUGUCCAACGUUUGACU   1214 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||*|||||||||||||||||||= targets:1181   GGUCUCCGUGUCCAACGUUUGACU   1204 Target Full Sequence	1.0	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK108063.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||||=||||*||||||||||||| targets:1343   GGUUUUCGUGCCCAACGUUUGACC   1366 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence	NA	coding protein	psRNATarget
AK287584.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||*|||||||||||||||||||= targets:1186   GGUCUCCGUGUCCAACGUUUGACU   1209 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =||*|||||||||||||||||||= targets:1209   GGUCUCCGUGUCCAACGUUUGACU   1232 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK242028.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||*|||||||=||||||||||| targets:1471   GGUUGCCGUGUCUAACGUUUGACC   1494 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||*|||||||=||||||||||| targets:1582   GGUUGCCGUGUCUAACGUUUGACC   1605 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||*|||||||=||||||||||| targets:1588   GGUUGCCGUGUCUAACGUUUGACC   1611 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||*|||||||=||||||||||| targets:1594   GGUUGCCGUGUCUAACGUUUGACC   1617 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK288606.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|||||||||||||||||||*||= targets:2344   GGUUUCCGUGUCCAACGUUUUACU   2367 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*||||||||||||||*||||||| targets:650   GAUUUCCGUGUCCAACAUUUGACC   673 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*||||||||||||||*||||||| targets:663   GAUUUCCGUGUCCAACAUUUGACC   686 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
XM_015787999.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |*||||||*|||||||||||||=| targets:745   ACUUUCCGCGUCCAACGUUUGAUC   768 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X2, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
CT836215.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |*||||||*|||||||||||||=| targets:1014   ACUUUCCGCGUCCAACGUUUGAUC   1037 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA223F11, full insert sequence	NA	coding protein	psRNATarget
XM_015787998.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |*||||||*|||||||||||||=| targets:1545   ACUUUCCGCGUCCAACGUUUGAUC   1568 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X1, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
XM_015759237.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*||||||||*||||=|||||||| targets:1742   GAUUUCCGUGCCCAAUGUUUGACC   1765 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X5, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759235.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*||||||||*||||=|||||||| targets:2348   GAUUUCCGUGCCCAAUGUUUGACC   2371 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X2, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759236.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*||||||||*||||=|||||||| targets:2360   GAUUUCCGUGCCCAAUGUUUGACC   2383 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X3, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759234.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*||||||||*||||=|||||||| targets:2363   GAUUUCCGUGCCCAAUGUUUGACC   2386 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X1, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
AK288811.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   |***||||||||=||||||||||| targets:202   AAAAUCCGUGUCUAACGUUUGACC   225 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK064197.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*|*|=||||||=||||||||||| targets:887   GAUAUUCGUGUCUAACGUUUGACC   910 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence	NA	coding protein	psRNATarget
AK109598.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =|***||||||||=|||||||||| targets:1651   GGGAACCGUGUCCGACGUUUGACC   1674 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-137-D09, full insert sequence	NA	coding protein	psRNATarget
XM_015770137.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =*|*||||||*||||||||||||| targets:3138   GAUAUCCGUGCCCAACGUUUGACC   3161 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112)	coding protein	psRNATarget
CT829159.1	ncRNA:24   UCAA---AGGCACAGGUUGCAAACUGG   1   *|||---|==*|||||||||||||||| targets:876   CGUUCACUUUUUGUCCAACGUUUGACC   902 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
AK120358.1	ncRNA:24   UCAAAGGCACAGGUUGCAAACUGG   1   =***||||||||||||*||||||| targets:1059   GAAAUCCGUGUCCAACAUUUGACC   1082 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence	NA	coding protein	psRNATarget