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BaseInfo

ncRNA ID	novel_osa_miR3096
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:16870156-16870227 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	22
Mature sequence(if miRNA)	1 - CGGCCGCCGGCCUCCCCCAUCC - 22
Stem-loop(if miRNA)	--    C  C   C    CCA    -      -GG   G   CGGC GC GGC UCCC   UCCC CCCUCC   CCA A   |||| || ||| ||||   |||| ||||||   |||   GCCG CG UCG AGGG   AGGG GGGAGG   GGU U CG    C  -   A    ---    A      AGA   C
Stem-loop sequence	CGGCCGCCGGCCUCCCCCAUCCCCCCUCCGGCCAGAUCUGGAGAGGAGGGAGGGAGGGAAGCUGCCGCCGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK101414.1	ncRNA:22   CCUACCC-CCUCCGGCCGCCGGC   1   |||||||-||||||||||||||* targets:281   GGAUGGGCGGAGGCCGGCGGCCU   303 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033037L04, full insert sequence	NA	coding protein	psRNATarget
XM_015794341.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   ||=|||||||||||||||*||| targets:1396   GGGUGGGGGAGGCCGGCGACCG   1417 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC4344489), mRNA	uncharacterized acetyltransferase At3g50280(LOC4344489)	coding protein	psRNATarget
AK070381.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   ||=|||||||||||||||*||| targets:1237   GGGUGGGGGAGGCCGGCGACCG   1258 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023054J24, full insert sequence	NA	coding protein	psRNATarget
CT835718.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   |||*||||||||||||=||||| targets:497   GGAGGGGGGAGGCCGGUGGCCG   518 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA045L10, full insert sequence	NA	coding protein	psRNATarget
CT827936.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   ||||*||||||||||||||*|| targets:340   GGAUCGGGGAGGCCGGCGGGCG   361 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015O18, full insert sequence	NA	coding protein	psRNATarget
XM_015787707.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*|||||||||||||*| targets:179   AGAUGGCGGAGGCCGGCGGCGG   200 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitogen-activated protein kinase 1 (LOC4340170), mRNA	mitogen-activated protein kinase 1(LOC4340170)	coding protein	psRNATarget
AK111691.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*|||||||||||||*| targets:109   AGAUGGCGGAGGCCGGCGGCGG   130 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023007A05, full insert sequence	NA	coding protein	psRNATarget
AJ535841.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*|||||||||||||*| targets:72   AGAUGGCGGAGGCCGGCGGCGG   93 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for mitogen-activated protein kinase (sipk gene)	NA	coding protein	psRNATarget
AB183398.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*|||||||||||||*| targets:120   AGAUGGCGGAGGCCGGCGGCGG   141 Target Full Sequence	2.5	Oryza sativa Japonica Group MAPK6 mRNA for MAP kinase 6, complete cds	NA	coding protein	psRNATarget
AK111942.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*|||||||||||||*| targets:111   AGAUGGCGGAGGCCGGCGGCGG   132 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-021-F11, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|=|*||*|||||||||||||| targets:1755   AGGUAGGCGAGGCCGGCGGCCG   1776 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK111266.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*||*|||||||||||| targets:377   AGAUGGUGGCGGCCGGCGGCCG   398 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-180-F07, full insert sequence	NA	coding protein	psRNATarget
XM_015768790.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|||||*||*|||||||||||| targets:441   AGAUGGUGGCGGCCGGCGGCCG   462 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330788 (LOC4330788), mRNA	uncharacterized LOC4330788(LOC4330788)	coding protein	psRNATarget
XM_015774628.1	ncRNA:22   CCUACCCCCUCCGGCCGCCGGC   1   *|=|||*|||||||||||*||| targets:1279   CGGUGGUGGAGGCCGGCGACCG   1300 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable polyamine oxidase 5 (LOC4327828), mRNA	probable polyamine oxidase 5(LOC4327828)	coding protein	psRNATarget