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BaseInfo

ncRNA ID novel_osa_miR3090
Species Oryza sativa
Class miRNA
Genome position Chr8:12775793-12775870 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR4407962;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AGAGAGUAGAGUAGAAGAAGUUGG - 24
Stem-loop(if miRNA) -AGA     G            U   A    ---U    A
    GAGUA AGUAGAAGAAGU GGA GAAU    CCGG G
    ||||| |||||||||||| ||| ||||    |||| U
    UUUAU UUAUUUUCUUUA CCU CUUA    GGCU U
AUUA     A            U   -    UAAU    G
Stem-loop sequence AGAGAGUAGAGUAGAAGAAGUUGGAAGAAUUCCGGAGUUGUCGGUAAUAUUCUCCUAUUUCUUUUAUUAUAUUUAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288356.1
ncRNA:24   GGUUGAAGAAGAUGAGAUGAGAGA   1
  ||=|||||*|||||||||||||||
targets:45   CCGACUUCCUCUACUCUACUCUCU   68

1.0 Oryza sativa Japonica Group cDNA, clone: J090024J04, full insert sequence NA coding protein psRNATarget