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BaseInfo

ncRNA ID	novel_osa_miR3089
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:1640685-1640753 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	24
Mature sequence(if miRNA)	46 - AGAUCUAAUGAUCGGAAACGAUUU - 69
Stem-loop(if miRNA)	--             U         A AAU   C   AUCGUUUUUGAUC UUGGAUCUA C   GCA A   ||||||||||||| ||||||||| |   ||| U   UAGCAAAGGCUAG AAUCUAGAU G   CGU C UU             U         C AUC   U
Stem-loop sequence	AUCGUUUUUGAUCUUUGGAUCUAACAAUGCACAUCUUGCCUAGCUAGAUCUAAUGAUCGGAAACGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289244.1	ncRNA:24   UUUAGCAAAGGCUAGUAAUCUAGA   1   ||||||||||||||=||||||||| targets:1058   AAAUCGUUUCCGAUUAUUAGAUCU   1081 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100076P10, full insert sequence	NA	coding protein	psRNATarget
AK241828.1	ncRNA:24   UUUAGCAAAGGCUAGUAAUCUAGA   1   *||-||*|||=||||||||||||| targets:860   UAA-CGCUUCUGAUCAUUAGAUCU   882 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065212M16, full insert sequence	NA	coding protein	psRNATarget
XM_015775160.1	ncRNA:24   UUUAGCAAAGGCUAGUAAUCUAGA   1   *||-||*|||=||||||||||||| targets:5428   UAA-CGCUUCUGAUCAUUAGAUCU   5450 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group bromodomain and WD repeat-containing protein 1 (LOC9268022), transcript variant X2, mRNA	bromodomain and WD repeat-containing protein 1(LOC9268022)	coding protein	psRNATarget
XM_015775159.1	ncRNA:24   UUUAGCAAAGGCUAGUAAUCUAGA   1   *||-||*|||=||||||||||||| targets:5536   UAA-CGCUUCUGAUCAUUAGAUCU   5558 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group bromodomain and WD repeat-containing protein 1 (LOC9268022), transcript variant X1, mRNA	bromodomain and WD repeat-containing protein 1(LOC9268022)	coding protein	psRNATarget