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BaseInfo

ncRNA ID	novel_osa_miR3087
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:22143425-22143594 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2857729;SRR2857733;SRR2857734;SRR2857736;SRR3123646;SRR3123650;SRR1609314;SRR1738210;SRR1738224;SRR1738228;SRR1738239
Length	25
Mature sequence(if miRNA)	1 - ACGGUUAAACGUUGGACACGGAAAC - 25
Stem-loop(if miRNA)	--             -                  A     UUUUU    AAUUCGU   -UUCAUUGUU   AG   -         G   UUCUGUGUCCAAC UUUAACUGUCCGUCUUAU UGAAA     UUAU       AUU          GUU  AUG AUAAAACAU A   ||||||||||||| |||||||||||||||||| |||||     ||||       |||          |||  ||| ||||||||| U   AAGGCACAGGUUG AAAUUGGCAGGCAGAAUA AUUUU     AAUA       UAA          CAG  UGC UAUUUUGUA U CA             C                  A     --UUU    CUUUUUU   UUUUUCUAUU   --   G         A
Stem-loop sequence	UUCUGUGUCCAACUUUAACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUGUUUUAUGCGUGACUUAUCUUUUUAAUUUUUUUCAUAAUUUUUUUAAAUAAGACGGACGGUUAAACGUUGGACACGGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT832631.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||||||||||||||||||=||||| targets:337   GUUUCCGUGUCCAACGUUUGACCGU   361 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||||||||||||||||||=||||| targets:337   GUUUCCGUGUCCAACGUUUGACCGU   361 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
CT828091.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   *||||||||||=|||||||=||||| targets:1568   AUUUCCGUGUCUAACGUUUGACCGU   1592 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence	NA	coding protein	psRNATarget
AK070212.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   ||||||*||||||||||||=||||| targets:1278   GUUUCCAUGUCCAACGUUUGACCGU   1302 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||||||||*|||||||||=||||| targets:177   GUUUCCGUGCCCAACGUUUGACCGU   201 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015776704.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||*|||||||=|||||||=||||| targets:1595   GUUGCCGUGUCUAACGUUUGACCGU   1619 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||*|||||||=|||||||=||||| targets:1589   GUUGCCGUGUCUAACGUUUGACCGU   1613 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776706.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||*|||||||=|||||||=||||| targets:1583   GUUGCCGUGUCUAACGUUUGACCGU   1607 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK242028.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||*|||||||=|||||||=||||| targets:1472   GUUGCCGUGUCUAACGUUUGACCGU   1496 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
AK107240.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   |||||=||||=||||||||||||*| targets:1746   GUUUCUGUGUUCAACGUUUAACCUU   1770 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-F04, full insert sequence	NA	coding protein	psRNATarget
AK108063.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   ||||=||||*|||||||||=||||| targets:1344   GUUUUCGUGCCCAACGUUUGACCGU   1368 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:25   CAA-----AGGCACAGGUUGCAAAUUGGCA   1   |||-----|||||||=||||||||=||||| targets:2666   GUUGGACAUCCGUGUUCAACGUUUGACCGU   2695 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
AK064197.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   *|*|=||||||=|||||||=||||| targets:888   AUAUUCGUGUCUAACGUUUGACCGU   912 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence	NA	coding protein	psRNATarget
XM_015770137.1	ncRNA:25   CAAAGGCACAGGUUGCAAAUUGGCA   1   *|*||||||*|||||||||=||||| targets:3139   AUAUCCGUGCCCAACGUUUGACCGU   3163 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112)	coding protein	psRNATarget