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BaseInfo

ncRNA ID	novel_osa_miR3086
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:25511728-25511884 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040389;SRR2040396;SRR2040410
Length	24
Mature sequence(if miRNA)	134 - AAGACGGACGGUCAAAUAUUGGAC - 157
Stem-loop(if miRNA)	--    CG   A              A     ------------------UUUUUU  UAAUUAGUAUUUUCAUUGUUGUUAGAUGA   CUAA  UUU ACUGUCCGUCUUAU UGAAA                        UA                             U   ||||  ||| |||||||||||||| |||||                        ||                             A   GGUU  AAA UGGCAGGCAGAAUA ACUUU                        CU                             A CA    AU   C              A     UUUAAUACUUUUUUUUUUAAUUUU  GUUCAGUGCGUAUUUCAUAAUUAGUAUAA
Stem-loop sequence	CUAACGUUUAACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUGAUUAAUACUUUAUGCGUGACUUGUCUUUUAAUUUUUUUUUUCAUAAUUUUUUCAAAUAAGACGGACGGUCAAAUAUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288770.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=|||=|||||||||||||||| targets:2312   GUCUAAUGUUUGACCGUCCGUCUU   2335 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090067O18, full insert sequence	NA	coding protein	psRNATarget
XM_015784718.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||||||=||||||=||||||||| targets:1394   GUCCAAUGUUUGACUGUCCGUCUU   1417 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA	basic 7S globulin(LOC4326528)	coding protein	psRNATarget
AK106724.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*||||||||||||||||| targets:672   GUCCAACAUUUGACCGUCCGUCUU   695 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*||||||||||||||||| targets:659   GUCCAACAUUUGACCGUCCGUCUU   682 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
CT833626.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=|||=||||||=||||||||| targets:1080   GUCUAAUGUUUGACUGUCCGUCUU   1103 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067K22, full insert sequence	NA	coding protein	psRNATarget
XM_015788892.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||||||||||||||| targets:3715   GUACCCAAUGUUUGACCGUCCGUCUU   3740 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4340067), mRNA	LRR receptor-like serine/threonine-protein kinase FLS2(LOC4340067)	coding protein	psRNATarget
AK287701.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||||||||||||||| targets:3586   GUACCCAAUGUUUGACCGUCCGUCUU   3611 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065130L06, full insert sequence	NA	coding protein	psRNATarget
AK120358.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*|||||||||||=||||| targets:1068   GUCCAACAUUUGACCGUCUGUCUU   1091 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence	NA	coding protein	psRNATarget
XM_015779567.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*||||||||||=|||||| targets:1946   GUCCAACAUUUGACCGUUCGUCUU   1969 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beta-fructofuranosidase, insoluble isoenzyme 3 (LOC4335789), mRNA	beta-fructofuranosidase, insoluble isoenzyme 3(LOC4335789)	coding protein	psRNATarget
AK120779.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*||||||||||=|||||| targets:1953   GUCCAACAUUUGACCGUUCGUCUU   1976 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023009M11, full insert sequence	NA	coding protein	psRNATarget
CT832631.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*=|||||||||||||||| targets:345   GUCCAACGUUUGACCGUCCGUCUU   368 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||||||*=|||||||||||||||| targets:345   GUCCAACGUUUGACCGUCCGUCUU   368 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
AK065455.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=||||||||||=||||| targets:2954   GUGCCCAAUGUUUGACCGUCUGUCUU   2979 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence	NA	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*=|||||||||||||||| targets:1603   GUCUAACGUUUGACCGUCCGUCUU   1626 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*=|||||||||||||||| targets:1597   GUCUAACGUUUGACCGUCCGUCUU   1620 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*=|||||||||||||||| targets:1591   GUCUAACGUUUGACCGUCCGUCUU   1614 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
CT828091.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*=|||||||||||||||| targets:1576   GUCUAACGUUUGACCGUCCGUCUU   1599 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence	NA	coding protein	psRNATarget
AK242028.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*=|||||||||||||||| targets:1480   GUCUAACGUUUGACCGUCCGUCUU   1503 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
HI403888.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||==||*=|||||||||||||||| targets:18   GUUUAACGUUUGACCGUCCGUCUU   41 Target Full Sequence	2.0	Sequence 2013 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236018.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||==||*=|||||||||||||||| targets:18   GUUUAACGUUUGACCGUCCGUCUU   41 Target Full Sequence	2.0	Sequence 2013 from Patent EP2985353	NA	coding protein	psRNATarget
JB164349.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ||==||*=|||||||||||||||| targets:18   GUUUAACGUUUGACCGUCCGUCUU   41 Target Full Sequence	2.0	Sequence 2013 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015770137.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--||||*=|||||||||||||||| targets:3145   GUGCCCAACGUUUGACCGUCCGUCUU   3170 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112)	coding protein	psRNATarget
AK100367.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||*|||||||||||| targets:976   GUGCCCAAUGUUUUACCGUCCGUCUU   1001 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083P20, full insert sequence	NA	coding protein	psRNATarget
XM_015759234.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||||||*|||||||| targets:2370   GUGCCCAAUGUUUGACCAUCCGUCUU   2395 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X1, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759236.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||||||*|||||||| targets:2367   GUGCCCAAUGUUUGACCAUCCGUCUU   2392 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X3, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759235.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||||||*|||||||| targets:2355   GUGCCCAAUGUUUGACCAUCCGUCUU   2380 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X2, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759237.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||||||*|||||||| targets:1749   GUGCCCAAUGUUUGACCAUCCGUCUU   1774 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X5, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015757480.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||*|||||||||||| targets:1026   GUGCCCAAUGUUUUACCGUCCGUCUU   1051 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348155 (LOC4348155), mRNA	uncharacterized LOC4348155(LOC4348155)	coding protein	psRNATarget
AK071213.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--|||||=|||*|||||||||||| targets:976   GUGCCCAAUGUUUUACCGUCCGUCUU   1001 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023087E24, full insert sequence	NA	coding protein	psRNATarget
AK108063.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--||||*=|||||||||||||||| targets:1350   GUGCCCAACGUUUGACCGUCCGUCUU   1375 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*||||||||||||*|||| targets:1681   GUCUAACAUUUGACCGUCCAUCUU   1704 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |||=||*||||||||||||*|||| targets:1681   GUCUAACAUUUGACCGUCCAUCUU   1704 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
AK289036.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   |*||||*=|||||||||||||||| targets:980   GCCCAACGUUUGACCGUCCGUCUU   1003 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090091J22, full insert sequence	NA	coding protein	psRNATarget
AK288575.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ****|||||||||||||=|||||| targets:3561   UAAAAAUAUUUGACCGUUCGUCUU   3584 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence	NA	coding protein	psRNATarget
AK066541.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--=|||*=|||||||||||||||| targets:2913   GUGCUCAACGUUUGACCGUCCGUCUU   2938 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013070E20, full insert sequence	NA	coding protein	psRNATarget
XM_015775992.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--=|||*=|||||||||||||||| targets:2916   GUGCUCAACGUUUGACCGUCCGUCUU   2941 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X1, mRNA	CBL-interacting protein kinase 10(LOC4332786)	coding protein	psRNATarget
XM_015775993.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--=|||*=|||||||||||||||| targets:1962   GUGCUCAACGUUUGACCGUCCGUCUU   1987 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X2, mRNA	CBL-interacting protein kinase 10(LOC4332786)	coding protein	psRNATarget
CT828824.1	ncRNA:24   CA--GGUUAUAAACUGGCAGGCAGAA   1   ||--=|||*=|||||||||||||||| targets:1082   GUGCUCAACGUUUGACCGUCCGUCUU   1107 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D05, full insert sequence	NA	coding protein	psRNATarget
AK288782.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   **|*|||=|||||||||=|||||| targets:1076   AGCAAAUGUUUGACCGUUCGUCUU   1099 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069D21, full insert sequence	NA	coding protein	psRNATarget
AK288960.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ****|||=|||||||||=|||||| targets:240   UAAAAAUGUUUGACCGUUCGUCUU   263 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence	NA	coding protein	psRNATarget
AK242125.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ****|||=|||||||||=|||||| targets:1860   AAAAAAUGUUUGACCGUUCGUCUU   1883 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075148C03, full insert sequence	NA	coding protein	psRNATarget
XM_015792994.1	ncRNA:24   CAGGUUAUAAACUGGCAGGCAGAA   1   ****|||=|||||||||=|||||| targets:1863   AAAAAAUGUUUGACCGUUCGUCUU   1886 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget