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BaseInfo

ncRNA ID novel_osa_miR3085
Species Oryza sativa
Class miRNA
Genome position Chr8:10530807-10530872 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1555751;SRR4407957;SRR1556018;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AUUUAUAUUGAUUUUGGACGGCUG - 24
Stem-loop(if miRNA) -AUUUAUA          A     -GA     A
        UUGAUUUUGG CGGCU   GAUUA U
        |||||||||| |||||   |||||
        GGCUAGAACC GUUGA   CUAGU C
AUUCGGUA          A     GAG     U
Stem-loop sequence AUUUAUAUUGAUUUUGGACGGCUGAGAUUAAUCUUGAUCGAGAGUUGACCAAGAUCGGAUGGCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241978.1
ncRNA:24   GUCGGCAGGUUUUAGUUAUAUUUA   1
  |||||*||=|||||||||||||||
targets:1235   CAGCCAUCUAAAAUCAAUAUAAAU   1258

2.0 Oryza sativa Japonica Group cDNA, clone: J075097A19, full insert sequence NA coding protein psRNATarget
CT835664.1
ncRNA:24   GUCGGCAGGUUUUAGUUAUAUUUA   1
  ***=||*||*||||||||||||||
targets:187   AUUUCGCCCCAAAUCAAUAUAAAU   210

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108E04, full insert sequence NA coding protein psRNATarget