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BaseInfo

ncRNA ID novel_osa_miR3084
Species Oryza sativa
Class miRNA
Genome position Chr7:21370925-21370989 [+]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2040386;SRR2040402;SRR2040404;SRR2040406;SRR2040410
Length 24
Mature sequence(if miRNA) 1 - UGUUUCCGAUCGUUGGAUCUAGCU - 24
Stem-loop(if miRNA) --U                 -CU  CUA   AU
   GUUUCCGAUCGUUGGAU   AG   GCC  G
   |||||||||||||||||   ||   |||
   CAAAGGCUAGCAAUCUA   UC   CGG  A
UAG                 AAU  UUA   AU
Stem-loop sequence UGUUUCCGAUCGUUGGAUCUAGCUAGCCAUGAUAGGCAUUCUUAAAUCUAACGAUCGGAAACGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404119.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  ||=|||||||||||||||||||=|
targets:97   AGUUAGAUCCAACGAUCGGAAAUA   120

1.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
LQ236249.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  ||=|||||||||||||||||||=|
targets:97   AGUUAGAUCCAACGAUCGGAAAUA   120

1.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
JB164580.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  ||=|||||||||||||||||||=|
targets:97   AGUUAGAUCCAACGAUCGGAAAUA   120

1.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
AK108234.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||||||||||||||||=
targets:493   UGUUAGAUCCAACGAUCGGAAACG   516

1.0 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
AK103106.1
ncRNA:24   UC--GAUCUAGGUUGCUAGCCUUUGU   1
  ||--||||||||||||||||||||=|
targets:1482   AGUACUAGAUCCAACGAUCGGAAAUA   1507

1.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:24   UC--GAUCUAGGUUGCUAGCCUUUGU   1
  ||--||||||||||||||||||||=|
targets:1481   AGUACUAGAUCCAACGAUCGGAAAUA   1506

1.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
XM_015778221.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||||||||||||||||=
targets:3055   UGUUAGAUCCAACGAUCGGAAACG   3078

1.0 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||||||||||||||||=
targets:3106   UGUUAGAUCCAACGAUCGGAAACG   3129

1.0 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015786123.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=|||||||||||||||||||==
targets:706   CGUUAGAUCCAACGAUCGGAAAUG   729

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
XM_015783108.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||=|||||||||||||=
targets:960   UGUUAGAUCUAACGAUCGGAAACG   983

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277789 (LOC107277789), mRNA uncharacterized LOC107277789(LOC107277789) coding protein psRNATarget
AK287529.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=|||||||||||||||||||==
targets:217   CGUUAGAUCCAACGAUCGGAAAUG   240

2.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=|||||||||||||||||||==
targets:217   CGUUAGAUCCAACGAUCGGAAAUG   240

2.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
LQ236668.1
ncRNA:24   UCG-----AUCUAGGUUGCUAGCCUUUGU   1
  |||-----|||||||||||||||||||==
targets:59   AGCAUUUUUAGAUCCAACGAUCGGAAAUG   87

2.5 Sequence 2663 from Patent EP2985353 NA coding protein psRNATarget
HI404538.1
ncRNA:24   UCG-----AUCUAGGUUGCUAGCCUUUGU   1
  |||-----|||||||||||||||||||==
targets:59   AGCAUUUUUAGAUCCAACGAUCGGAAAUG   87

2.5 Sequence 2663 from Patent EP2074227 NA coding protein psRNATarget
JB164999.1
ncRNA:24   UCG-----AUCUAGGUUGCUAGCCUUUGU   1
  |||-----|||||||||||||||||||==
targets:59   AGCAUUUUUAGAUCCAACGAUCGGAAAUG   87

2.5 Sequence 2663 from Patent EP2559767 NA coding protein psRNATarget
LQ236460.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||||||*|||||||||=
targets:48   UGUUAGAUCCAACAAUCGGAAACG   71

2.5 Sequence 2455 from Patent EP2985353 NA coding protein psRNATarget
HI404330.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||||||*|||||||||=
targets:48   UGUUAGAUCCAACAAUCGGAAACG   71

2.5 Sequence 2455 from Patent EP2074227 NA coding protein psRNATarget
JB164791.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=||||||||||*|||||||||=
targets:48   UGUUAGAUCCAACAAUCGGAAACG   71

2.5 Sequence 2455 from Patent EP2559767 NA coding protein psRNATarget
AK288361.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  **=|||||||||||||=||||||=
targets:2983   UUUUAGAUCCAACGAUUGGAAACG   3006

2.5 Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence NA coding protein psRNATarget
XM_015779289.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=|||||||||||||||*||||=
targets:1546   UGUUAGAUCCAACGAUCGAAAACG   1569

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779283.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=|||||||||||||||*||||=
targets:1737   UGUUAGAUCCAACGAUCGAAAACG   1760

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779276.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  *|=|||||||||||||||*||||=
targets:1744   UGUUAGAUCCAACGAUCGAAAACG   1767

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779655.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  **=||*|||||||||||||||||=
targets:1550   UCUUAAAUCCAACGAUCGGAAACG   1573

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
LQ235663.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  |**|*||*||||||||||||||||
targets:53   AAAUCGAACCAACGAUCGGAAACA   76

1.0 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
JB163994.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  |**|*||*||||||||||||||||
targets:53   AAAUCGAACCAACGAUCGGAAACA   76

1.0 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
HI403533.1
ncRNA:24   UCGAUCUAGGUUGCUAGCCUUUGU   1
  |**|*||*||||||||||||||||
targets:53   AAAUCGAACCAACGAUCGGAAACA   76

1.0 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
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