Search result

BaseInfo

ncRNA ID	novel_osa_miR3082
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:1123284-1123377 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040401
Length	24
Mature sequence(if miRNA)	71 - AAUUACAUAUAUAAUUUAGGGACU - 94
Stem-loop(if miRNA)	-- UU GAAU                   --AC     U      UUU   U  C    UUAUAUAUGUAAUUUUAGU    UUACA AUGUAA   U   |  |    |||||||||||||||||||    ||||| ||||||   G   A  G    AAUAUAUACAUUAAAAUCA    AAUGU UACAUU   A UC GG AUUU                   CAUA     -      CAU
Stem-loop sequence	UUUCGAAUUUAUAUAUGUAAUUUUAGUACUUACAUAUGUAAUUUUGAUACUUACAUUGUAAAUACACUAAAAUUACAUAUAUAAUUUAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288799.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |||||||||*|||||||||||||| targets:5372   AGUCCCUAAUUUAUAUAUGUAAUU   5395 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget
AK242848.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |||||||||||||*|||||||||| targets:4453   AGUCCCUAAAUUACAUAUGUAAUU   4476 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090072L17, full insert sequence	NA	coding protein	psRNATarget
XM_015795881.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |||||||||||||*|||||||||| targets:1710   AGUCCCUAAAUUACAUAUGUAAUU   1733 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 71A1 (LOC4347661), mRNA	cytochrome P450 71A1(LOC4347661)	coding protein	psRNATarget
AK120444.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |||||||||||||*|||||||||| targets:1675   AGUCCCUAAAUUACAUAUGUAAUU   1698 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013099E24, full insert sequence	NA	coding protein	psRNATarget
AK120674.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |||||||||||||*|||||||||| targets:1673   AGUCCCUAAAUUACAUAUGUAAUU   1696 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013161I12, full insert sequence	NA	coding protein	psRNATarget
XM_015772487.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |*|==||||||||*|||||||||| targets:1771   AAUUUCUAAAUUACAUAUGUAAUU   1794 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group anthocyanin 3'-O-beta-glucosyltransferase (LOC4326578), mRNA	anthocyanin 3'-O-beta-glucosyltransferase(LOC4326578)	coding protein	psRNATarget
AK101659.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |*|==||||||||*|||||||||| targets:1754   AAUUUCUAAAUUACAUAUGUAAUU   1777 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033057I21, full insert sequence	NA	coding protein	psRNATarget
AK103824.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   |*|==||||||||*|||||||||| targets:1754   AAUUUCUAAAUUACAUAUGUAAUU   1777 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033147K24, full insert sequence	NA	coding protein	psRNATarget
AK318524.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   **||||||||||||||||*||||* targets:1187   UAUCCCUAAAUUAUAUAUAUAAUA   1210 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065057P07, full insert sequence	NA	coding protein	psRNATarget
AK109721.1	ncRNA:24   UCAGGGAUUUAAUAUAUACAUUAA   1   **||=||*|||||||||||||*|| targets:1344   UUUCUCUCAAUUAUAUAUGUACUU   1367 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-146-A10, full insert sequence	NA	coding protein	psRNATarget