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BaseInfo

ncRNA ID	novel_osa_miR3080
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:28101994-28102158 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2857734;SRR1738227
Length	24
Mature sequence(if miRNA)	142 - AACUGCUUUAAGUUUGACUAAGUU - 165
Stem-loop(if miRNA)	--     C                      UAU   U            ACA     ---AA     -   UAUUAAAUUAAUAA   AACUG UUUAAGUUUGACUAAGUUUAUA   AAA AUAGUAAUAUUU   UUACU     AUUAG UUU              U   ||||| ||||||||||||||||||||||   ||| ||||||||||||   |||||     ||||| |||              U   UUGAC AAAUUCAAACUGAUUUAAAUAU   UUU UAUCAUUAUAAA   AAUGA     AUUUA AUA              A GU     A                      CUU   U            --A     GUUCU     A   AUAUUUUUAUAUAA
Stem-loop sequence	AACUGCUUUAAGUUUGACUAAGUUUAUAUAUAAAUAUAGUAAUAUUUACAUUACUAAAUUAGUUUUAUUAAAUUAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUAUCUUGAGUAAAAAAUAUUACUAUUUUUUUCUAUAAAUUUAGUCAAACUUAAAACAGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833794.1	ncRNA:24   UUGAAUCAGUUUGAAUUUCGUCAA   1   ||||||||=||||||=|||||||| targets:612   AACUUAGUUAAACUUGAAGCAGUU   635 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F13, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:24   UUGAAUCAGUUUGAAUUUCGUCAA   1   |||||=|||||||||=|||||||| targets:2275   AACUUGGUCAAACUUGAAGCAGUU   2298 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
CT837874.1	ncRNA:24   UUGAAUCAGUUUGAAUUUCGUCAA   1   ||||||*||||||||=|||||||| targets:297   AACUUAAUCAAACUUGAAGCAGUU   320 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
XM_015756529.1	ncRNA:24   UUGAAUCAGUUUGAAUUUCGUCAA   1   ||||||*||||||||=|||||||| targets:993   AACUUAAUCAAACUUGAAGCAGUU   1016 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA3 (LOC9271983), mRNA	putative disease resistance protein RGA3(LOC9271983)	coding protein	psRNATarget
AK066719.1	ncRNA:24   UU-GAAUCAGUUUGAAUUUCGUCAA   1   ||-||||||=||||||=|||||||| targets:808   AAUCUUAGUUAAACUUGAAGCAGUU   832 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013082K18, full insert sequence	NA	coding protein	psRNATarget
XM_015769365.1	ncRNA:24   UUGAAUCAGUUUGAAUUUCGUCAA   1   =|*|||||=||||||||||=|||| targets:1165   GAGUUAGUUAAACUUAAAGUAGUU   1188 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329064 (LOC4329064), mRNA	uncharacterized LOC4329064(LOC4329064)	coding protein	psRNATarget