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BaseInfo

ncRNA ID	novel_osa_miR3079
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:26724629-26724850 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	22
Mature sequence(if miRNA)	1 - UUCUCGGAUUUAAUACGUGACU - 22
Stem-loop(if miRNA)	--    C         AC                   C C       A       G                                 CUACUUAUCAUC   UUAAACAUGCU   UUCU GGAUUUAAU  GUGACUCUUCAUUCUUCCA A AAGAUUG CUACAUG GCAUCGAGAAAAGUAAAUAUUAAUGAAUCGUUU            CAU           A   |||| |||||||||  ||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||            |||           C   AAGA CCUAAAUUA  CACUGAGAGGUAAGAAGGU U UUCUAAC GAUGUAC CGUAGCUCUUUUCAUUUAUAAUUACUUAGCAAA            AUG           U GA    A         AU                   A A       C       A                                 ---------AAA   CUCCUUACUGA
Stem-loop sequence	UUCUCGGAUUUAAUACGUGACUCUUCAUUCUUCCACACAAGAUUGACUACAUGGGCAUCGAGAAAAGUAAAUAUUAAUGAAUCGUUUCUACUUAUCAUCCAUUUAAACAUGCUACUAGUCAUUCCUCGUAAAAAAACGAUUCAUUAAUAUUUACUUUUCUCGAUGCACAUGUAGCCAAUCUUAUAUGGAAGAAUGGAGAGUCACUAAUUAAAUCCAAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK069229.1	ncRNA:22   UCAGUGCAUAAUUUAGGCUCUU   1   |||||=|||||||||||*|||| targets:2494   AGUCAUGUAUUAAAUCCAAGAA   2515 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012H21, full insert sequence	NA	coding protein	psRNATarget
XM_015776051.1	ncRNA:22   UCAGUGCAUAAUUUAGGCUCUU   1   |||||=|||||||||||*|||| targets:2538   AGUCAUGUAUUAAAUCCAAGAA   2559 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable cyclic nucleotide-gated ion channel 6 (LOC4333569), mRNA	probable cyclic nucleotide-gated ion channel 6(LOC4333569)	coding protein	psRNATarget
AK073029.1	ncRNA:22   UCAGUGCAUAAUUUAGGCUCUU   1   |||||=|*|||||||||||||| targets:1999   AGUCAUGCAUUAAAUCCGAGAA   2020 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence	NA	coding protein	psRNATarget
AK121928.1	ncRNA:22   UCAGUGCAUAAUUUAGGCUCUU   1   |||||||*|||||||=|||||| targets:4206   AGUCACGCAUUAAAUUCGAGAA   4227 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033106J05, full insert sequence	NA	coding protein	psRNATarget