Search result

BaseInfo

ncRNA ID	novel_osa_miR3076
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:16717006-16717176 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040385;SRR2040386;SRR2040387;SRR2040394;SRR2040397;SRR2040401;SRR2040402;SRR2040404;SRR2040405;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR3123650;SRR3123651;SRR1738237;SRR1738239;SRR1738240
Length	24
Mature sequence(if miRNA)	1 - AAAAUAACUAAUUACACAGAUUGU - 24
Stem-loop(if miRNA)	---AA     C        U    AAAAA    U           C  G            G     AU  GAUUU     AAAA   U      CUGUG AAUUAGUU UUUU     UCUA AUUUAAUGCUC AU CAUGUGUCCAAA AUUCG  GU     UUUGG    ACU U      ||||| |||||||| ||||     |||| ||||||||||| || |||||||||||| |||||  ||     |||||    |||      GACAC UUAAUCAA AAAA     AGAU UAAAUUAUGAG UA GUACACAGGUUU UAAGC  CG     AAAUC    UGA U UGUUA     A        U    -AAAC    -           A  A            G     CC  --GAC     --AA   U
Stem-loop sequence	AACUGUGCAAUUAGUUUUUUUAAAAAUCUAUAUUUAAUGCUCCAUGCAUGUGUCCAAAGAUUCGAUGUGAUUUUUUGGAAAAACUUUUUAGUAACUAAACAGGCCCCGAAUGUUUGGACACAUGAAUAGAGUAUUAAAUUAGACAAAAAAAUAACUAAUUACACAGAUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072341.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   =||||||||||||||||||||||| targets:2420   GCAAUCUGUGUAAUUAGUUAUUUU   2443 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
XM_015773668.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   |||||||||||||||||||||||* targets:1831   ACAAUCUGUGUAAUUAGUUAUUUA   1854 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
XM_015757189.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ==|||||||||||||||||||||| targets:2653   GUAAUCUGUGUAAUUAGUUAUUUU   2676 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group poly(rC)-binding protein 3 (LOC4347471), transcript variant X1, mRNA	poly(rC)-binding protein 3(LOC4347471)	coding protein	psRNATarget
AK119581.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ==|||||||||||||||||||||| targets:2581   GUAAUCUGUGUAAUUAGUUAUUUU   2604 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-117-C01, full insert sequence	NA	coding protein	psRNATarget
XM_015757190.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ==|||||||||||||||||||||| targets:2545   GUAAUCUGUGUAAUUAGUUAUUUU   2568 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group poly(rC)-binding protein 3 (LOC4347471), transcript variant X2, mRNA	poly(rC)-binding protein 3(LOC4347471)	coding protein	psRNATarget
AK289150.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   |||||||||*|||||||||=|||| targets:735   ACAAUCUGUAUAAUUAGUUGUUUU   758 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   =||||||||||||||||||*|||| targets:3144   GCAAUCUGUGUAAUUAGUUUUUUU   3167 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   =|||||||||*||||||||||||| targets:1147   GCAAUCUGUGCAAUUAGUUAUUUU   1170 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
AK288540.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ||||*||||*|||||||||||||| targets:1768   ACAAACUGUAUAAUUAGUUAUUUU   1791 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090045N03, full insert sequence	NA	coding protein	psRNATarget
AK119352.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ||||*||||*|||||||||||||| targets:2102   ACAAACUGUAUAAUUAGUUAUUUU   2125 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence	NA	coding protein	psRNATarget
XM_015769937.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ||||*||||*|||||||||||||| targets:2108   ACAAACUGUAUAAUUAGUUAUUUU   2131 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
XM_015769938.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   ||||*||||*|||||||||||||| targets:2015   ACAAACUGUAUAAUUAGUUAUUUU   2038 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
AK288647.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   |=|||*|||*|||||||||||||| targets:2126   AUAAUAUGUAUAAUUAGUUAUUUU   2149 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   =|||||||||*|||||*||||||| targets:149   GCAAUCUGUGCAAUUAUUUAUUUU   172 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   =|||||||||*|||||*||||||| targets:580   GCAAUCUGUGCAAUUAUUUAUUUU   603 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   |=|||||*||*||||||||||||| targets:2452   AUAAUCUAUGCAAUUAGUUAUUUU   2475 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
AK288995.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   =||||*||||*||||||||||||| targets:1446   GCAAUAUGUGCAAUUAGUUAUUUU   1469 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence	NA	coding protein	psRNATarget
AK289029.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   *|*||||||||||||||||*|||| targets:2250   CCCAUCUGUGUAAUUAGUUUUUUU   2273 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   *||||||*||*||||||||||||| targets:1251   CCAAUCUAUGCAAUUAGUUAUUUU   1274 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget
AK288832.1	ncRNA:24   UGUUAGACACAUUAAUCAAUAAAA   1   *||--|||||*||||||||=|||| targets:472   CCA--CUGUGCAAUUAGUUGUUUU   493 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073P17, full insert sequence	NA	coding protein	psRNATarget