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BaseInfo

ncRNA ID novel_osa_miR3070
Species Oryza sativa
Class miRNA
Genome position Chr10:12152184-12152319 [+]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2098822;SRR2099746
Length 24
Mature sequence(if miRNA) 1 - GUUUCACACUGUAAGACUUUCUAG - 24
Stem-loop(if miRNA) --      C C                     C  C      A    U             AG    U
  GUUUCA A UGUAAGACUUUCUAGCAUUGC CA AUUUAU UAGA GUUAAUGAAUCUA  CAUA U
  |||||| | ||||||||||||||||||||| || |||||| |||| |||||||||||||  ||||
  CAAAGU U ACAUUCUGAAAGAUCGUAACG GU UAAGUA AUCU CAAUUACUUAGAU  GUGU U
GG      C A                     A  A      A    U             CU    A
Stem-loop sequence GUUUCACACUGUAAGACUUUCUAGCAUUGCCCACAUUUAUAUAGAUGUUAAUGAAUCUAAGCAUAUUUAUGUGUCUAGAUUCAUUAACUUCUAAAUGAAUAUGAGCAAUGCUAGAAAGUCUUACAAUCUGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT836330.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:918   CUAGAAAGUCUUACAUUGUGAAAC   941

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence NA coding protein psRNATarget
AK241537.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:920   CUAGAAAGUCUUACAUUGUGAAAC   943

1.5 Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence NA coding protein psRNATarget
XM_015795868.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:1258   CUAGAAAGUCUUACAUUGUGAAAC   1281

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA uncharacterized LOC107277671(LOC107277671) coding protein psRNATarget
AK288472.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:1512   CUAGAAAGUCUUACACUGUGAAAC   1535

1.5 Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence NA coding protein psRNATarget
XM_015785143.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:1814   CUAGAAAGUCUUACAUUGUGAAAC   1837

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266451 (LOC9266451), mRNA uncharacterized LOC9266451(LOC9266451) coding protein psRNATarget
AK072517.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:1420   CUAGAAAGUCUUACAUUGUGAAAC   1443

1.5 Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence NA coding protein psRNATarget
AK101666.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:1696   CUAGAAAGUCUUACAUUGUGAAAC   1719

1.5 Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence NA coding protein psRNATarget
AK288932.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:3069   CUAGAAAGUCUUACAUUGUGAAAC   3092

1.5 Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence NA coding protein psRNATarget
XM_015766553.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:625   CUAGAAAGUCUUACAUUGUGAAAC   648

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:1815   CUAGAAAGUCUUACAUUGUGAAAC   1838

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:2429   CUAGAAAGUCUUACAUUGUGAAAC   2452

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:2795   CUAGAAAGUCUUACAUUGUGAAAC   2818

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:2795   CUAGAAAGUCUUACAUUGUGAAAC   2818

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766546.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*||||||||
targets:2795   CUAGAAAGUCUUACAUUGUGAAAC   2818

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
AK059715.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  |||||||||||||||*|||||||=
targets:128   CUAGAAAGUCUUACAUUGUGAAAU   151

2.5 Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence NA coding protein psRNATarget
AK103229.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  =||||||||||||||*||||||||
targets:502   UUAGAAAGUCUUACAUUGUGAAAC   525

1.5 Oryza sativa Japonica Group cDNA clone:J033123D06, full insert sequence NA coding protein psRNATarget
AK067660.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  =||||||||||||||*||||||||
targets:2799   UUAGAAAGUCUUACAUUGUGAAAC   2822

1.5 Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence NA coding protein psRNATarget
XM_015786027.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  ||||||||*||||||*||||||||
targets:4337   CUAGAAAGCCUUACAUUGUGAAAC   4360

2.5 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget
AK119344.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  *||||||||||||||*|||||||*
targets:1261   GUAGAAAGUCUUACAUUGUGAAAG   1284

2.5 Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence NA coding protein psRNATarget
XM_015779139.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  *||*|||||||||||*||||||||
targets:1013   GUAAAAAGUCUUACAUUGUGAAAC   1036

1.5 PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 7 (LOC4336128), mRNA fasciclin-like arabinogalactan protein 7(LOC4336128) coding protein psRNATarget
AK110545.1
ncRNA:24   GAUCUUUCAGAAUGUCACACUUUG   1
  *||*|||||||||||*||||||||
targets:1019   GUAAAAAGUCUUACAUUGUGAAAC   1042

1.5 Oryza sativa Japonica Group cDNA clone:002-168-B08, full insert sequence NA coding protein psRNATarget
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