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BaseInfo

ncRNA ID	novel_osa_miR3069
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:12865529-12865588 [+]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR2099567;SRR2099746;SRR1300837
Length	24
Mature sequence(if miRNA)	37 - GGGAGCUAGAGCUGUGCCAAACGG - 60
Stem-loop(if miRNA)	--              CG     AGGUAAG   GUUUGGCAUAGCUC  GCUCC       U   ||||||||||||||  |||||   CAAACCGUGUCGAG  CGAGG       U GG              AU     GUUGAGA
Stem-loop sequence	GUUUGGCAUAGCUCCGGCUCCAGGUAAGUUAGAGUUGGGAGCUAGAGCUGUGCCAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015786448.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=|||||||||||||||||||||* targets:818   CUGUUUGGCACAGCUCUAGCUCCA   841 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X5, mRNA	uncharacterized LOC107281192(Os06g0609001)	coding protein	psRNATarget
XM_015786446.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=|||||||||||||||||||||* targets:851   CUGUUUGGCACAGCUCUAGCUCCA   874 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X3, mRNA	uncharacterized LOC107281192(Os06g0609001)	coding protein	psRNATarget
XM_015786447.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=|||||||||||||||||||||* targets:864   CUGUUUGGCACAGCUCUAGCUCCA   887 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X4, mRNA	uncharacterized LOC107281192(Os06g0609001)	coding protein	psRNATarget
XM_015786444.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=|||||||||||||||||||||* targets:869   CUGUUUGGCACAGCUCUAGCUCCA   892 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X1, mRNA	uncharacterized LOC107281192(Os06g0609001)	coding protein	psRNATarget
XM_015786445.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=|||||||||||||||||||||* targets:882   CUGUUUGGCACAGCUCUAGCUCCA   905 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X2, mRNA	uncharacterized LOC107281192(Os06g0609001)	coding protein	psRNATarget
AK288250.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   ||*||||||||||||||||||||| targets:1806   CCAUUUGGCACAGCUCUAGCUCCC   1829 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090015A01, full insert sequence	NA	coding protein	psRNATarget
AK110345.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=|*|||||||||||||||||||| targets:2598   CUGGUUGGCACAGCUCUAGCUCCC   2621 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-164-G05, full insert sequence	NA	coding protein	psRNATarget
XM_015766500.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=||||||||||||||*||||||* targets:1086   CUGUUUGGCACAGCUCCAGCUCCA   1109 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable staphylococcal-like nuclease CAN1 (LOC107276328), transcript variant X2, mRNA	probable staphylococcal-like nuclease CAN1(LOC107276328)	coding protein	psRNATarget
XM_015766499.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=||||||||||||||*||||||* targets:1095   CUGUUUGGCACAGCUCCAGCUCCA   1118 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable staphylococcal-like nuclease CAN1 (LOC107276328), transcript variant X1, mRNA	probable staphylococcal-like nuclease CAN1(LOC107276328)	coding protein	psRNATarget
XM_015760175.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=||||||||||||||*||||||* targets:730   CUGUUUGGCACAGCUCCAGCUCCA   753 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box only protein 7 (LOC4350849), mRNA	F-box only protein 7(LOC4350849)	coding protein	psRNATarget
XM_015779315.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   |=||||||||||||||*||||||* targets:3688   CUGUUUGGCACAGCUCCAGCUCCA   3711 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein Rf1, mitochondrial (LOC9271155), mRNA	protein Rf1, mitochondrial(LOC9271155)	coding protein	psRNATarget
XM_015768499.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   ==||||||||||||||*||||||* targets:1074   UUGUUUGGCACAGCUCCAGCUCCA   1097 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X2, mRNA	calcineurin B-like protein 8(LOC107276173)	coding protein	psRNATarget
XM_015768498.1	ncRNA:24   GGCAAACCGUGUCGAGAUCGAGGG   1   ==||||||||||||||*||||||* targets:1107   UUGUUUGGCACAGCUCCAGCUCCA   1130 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X1, mRNA	calcineurin B-like protein 8(LOC107276173)	coding protein	psRNATarget