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BaseInfo

ncRNA ID	novel_osa_miR3068
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:4288021-4288121 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	24
Mature sequence(if miRNA)	78 - ACCGGGACUAAAGAUACUCUAUCU - 101
Stem-loop(if miRNA)	---A              A U                     -   U  UUA     CCGGGACUAAAGAU C CUAUCUUUAGUCCCGGUUGGU CCA CU   G     |||||||||||||| | ||||||||||||||||||||| ||| ||     GGCCCUGAUUUCUA G GGUAGAAAUCAGGGCCAACCA GGU GA   U GUUA              C -                     U   U  CCC
Stem-loop sequence	ACCGGGACUAAAGAUACUCUAUCUUUAGUCCCGGUUGGUCCAUCUUUAGUCCCAGUUGGUACCAACCGGGACUAAAGAUGGGCAUCUUUAGUCCCGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288424.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   ||||-|=||||||||||||||||* targets:1323   AGAU-GGGUAUCUUUAGUCCCGGG   1345 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   ||||-|||*||||||||||||||| targets:63   AGAU-GAGGAUCUUUAGUCCCGGU   85 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288859.1	ncRNA:24   UCU-AUCUC-AUAGAAAUCAGGGCCA   1   =||-||*||-|||||||||||||||| targets:2228   GGAGUAAAGAUAUCUUUAGUCCCGGU   2253 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   ||||-|**|||||||||||||||* targets:677   AGAU-GCCUAUCUUUAGUCCCGGA   699 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   **|||||**||||||||||||||| targets:32   CUAUAGAUCAUCUUUAGUCCCGGU   55 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   **|||||**||||||||||||||| targets:1433   CUAUAGAUCAUCUUUAGUCCCGGU   1456 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   **|||||**||||||||||||||| targets:1439   CUAUAGAUCAUCUUUAGUCCCGGU   1462 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288405.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   **|*|||*|||=|||||||||||| targets:2341   CUAAAGAUUAUUUUUAGUCCCGGU   2364 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   =|=**|||*||||||||||||||| targets:1692   GGGCCGAGGAUCUUUAGUCCCGGU   1715 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   **|***=||||||||||||||||| targets:1867   CCAACCGGUAUCUUUAGUCCCGGU   1890 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   *******|*||||||||||||||| targets:1252   CCCCCUCGGAUCUUUAGUCCCGGU   1275 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288799.1	ncRNA:24   UCUAUCUCAUAGAAAUCAGGGCCA   1   ||||-|*|*||||||||||||||* targets:326   AGAU-GCGCAUCUUUAGUCCCGGA   348 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget