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BaseInfo

ncRNA ID	novel_osa_miR3067
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:16255611-16255697 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	24
Mature sequence(if miRNA)	64 - AAUACCAACCGGGACUAAAGAUCU - 87
Stem-loop(if miRNA)	--                    A                  AU   AUCUUUAGUCCCGGUUGGUA UACCAACCGGGACUAAAG  C   |||||||||||||||||||| ||||||||||||||||||  G   UAGAAAUCAGGGCCAACCAU AUGGUUGGCUCUGAUUUC  U UC                    A                  AA
Stem-loop sequence	AUCUUUAGUCCCGGUUGGUAAUACCAACCGGGACUAAAGAUCGUAACUUUAGUCUCGGUUGGUAAUACCAACCGGGACUAAAGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   |||||||||||||||||||||=|| targets:146   AGAUCUUUAGUCCCGGUUGGUGUU   169 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   ||||||||||||||||||||||** targets:237   AGAUCUUUAGUCCCGGUUGGUAAC   260 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   *||||||||*|||||||||||*|| targets:103   CGAUCUUUACUCCCGGUUGGUUUU   126 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   *||||||||||||||||||||||| targets:1907   CGAUCUUUAGUCCCGGUUGGUAUU   1930 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   *||||||||||||||||||||=|| targets:1375   CGAUCUUUAGUCCCGGUUGGUGUU   1398 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   *||||||||||||||||||||=|| targets:1829   CGAUCUUUAGUCCCGGUUGGUGUU   1852 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   =||||||||||||||||||||=|* targets:554   GGAUCUUUAGUCCCGGUUGGUGUC   577 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   =|||||||||||||||||||||** targets:1699   GGAUCUUUAGUCCCGGUUGGUAAC   1722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   **|||||||||||||||||||||* targets:928   UAAUCUUUAGUCCCGGUUGGUAUG   951 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   **|||||||||||||||||||||* targets:1373   UUAUCUUUAGUCCCGGUUGGUAUA   1396 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288734.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   *|||||||||||||||||||||** targets:46   UGAUCUUUAGUCCCGGUUGGUAAC   69 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   **||||||||*|||||||||||*| targets:1368   CCAUCUUUAGCCCCGGUUGGUAAU   1391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   |*||||||||||||||||||||** targets:1904   AAAUCUUUAGUCCCGGUUGGUAGC   1927 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   |*||||||||||||||||||||** targets:2362   AAAUCUUUAGUCCCGGUUGGUAAC   2385 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   ***|=||||||=|||||||||||* targets:1402   UCUUUUUUAGUUCCGGUUGGUAUC   1425 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK066662.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUAA   1   =*||||||||||||||||*||||* targets:654   GUAUCUUUAGUCCCGGUUCGUAUC   677 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget