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BaseInfo

ncRNA ID	novel_osa_miR3065
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:457848-458019 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040391
Length	24
Mature sequence(if miRNA)	1 - UUUUUCUUGCACUGUUUGACCACU - 24
Stem-loop(if miRNA)	---U   U            G                         -  -    UAUUAUUUAUUUUAU     ----AAU       U     UUU CUUGCACUGUUU ACCACUUGUCUUAUUCAAAAAAUUU UG AAAU               UUGUG       UACUUUA U     ||| |||||||||||| ||||||||||||||||||||||||| || ||||               |||||       ||||||| A     AAA GAACGUGACAAA UGGUGAGCAGAAUAAGUUUUUUAAA AC UUUA               AACAC       AUGAAAU U UGAU   C            A                         C  G    UAUUUUUUGCUUUUC     GAAUUUC       C
Stem-loop sequence	UUUUUCUUGCACUGUUUGACCACUUGUCUUAUUCAAAAAAUUUUGAAAUUAUUAUUUAUUUUAUUUGUGAAUUACUUUAUUAUCUAAAGUACUUUAAGCACAACUUUUCGUUUUUUAUAUUUGCACAAAUUUUUUGAAUAAGACGAGUGGUAAAACAGUGCAAGCAAAUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   UCACCAGUUUGUCACGUUC-UUUUU   1   |||||||||||||||||||-||||| targets:671   AGUGGUCAAACAGUGCAAGCAAAAA   695 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |||||||||||||||||||*|||| targets:188   AGUGGUCAAACAGUGCAAGCAAAA   211 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK111668.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   ||||||||||||||*||||||||| targets:4395   AGUGGUCAAACAGUACAAGAAAAA   4418 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013153P21, full insert sequence	NA	coding protein	psRNATarget
HI404089.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |*|||||||||||||=|||||||| targets:155   AAUGGUCAAACAGUGUAAGAAAAA   178 Target Full Sequence	1.5	Sequence 2214 from Patent EP2074227	NA	coding protein	psRNATarget
JB164550.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |*|||||||||||||=|||||||| targets:155   AAUGGUCAAACAGUGUAAGAAAAA   178 Target Full Sequence	1.5	Sequence 2214 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236219.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |*|||||||||||||=|||||||| targets:155   AAUGGUCAAACAGUGUAAGAAAAA   178 Target Full Sequence	1.5	Sequence 2214 from Patent EP2985353	NA	coding protein	psRNATarget
AK289150.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   ||||||=||||||||||||*|||| targets:2732   AGUGGUUAAACAGUGCAAGCAAAA   2755 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK288846.1	ncRNA:24   UCACCAGUUUGUCACGUUC-UUUUU   1   ||||*||||||||||||||-||||| targets:60   AGUGAUCAAACAGUGCAAGCAAAAA   84 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |*|||||||||||||||||*|||| targets:608   AAUGGUCAAACAGUGCAAGUAAAA   631 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |*|||||||||||||||||*|||| targets:1427   AAUGGUCAAACAGUGCAAGCAAAA   1450 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   UCACCAGUUUGUCACGUUCUUUUU   1   |*|||||||||||||||||*|||| targets:1706   AAUGGUCAAACAGUGCAAGCAAAA   1729 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK110728.1	ncRNA:24   UCACCAG-UUUGUCACGUUCUUUUU   1   |**|*||-|=||||||||||||||| targets:207   ACAGAUCUAGACAGUGCAAGAAAAA   231 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-170-E07, full insert sequence	NA	coding protein	psRNATarget