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BaseInfo

ncRNA ID	novel_osa_miR3064
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:29203847-29203935 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	24
Mature sequence(if miRNA)	66 - AUCUAUAUGUAUGUCGGCAAUGCU - 89
Stem-loop(if miRNA)	--       C    U   U          A           UUAU   CAUUGCC AUAU CAU UAGAUGUUAA UGAAUCUAGAC    G   ||||||| |||| ||| |||||||||| |||||||||||   GUAACGG UGUA GUA AUCUACAAUU ACUUAGAUUUG    U UC       C    U   U          -           UGUA
Stem-loop sequence	CAUUGCCCAUAUUCAUUUAGAUGUUAAAUGAAUCUAGACUUAUGUAUGUGUUUAGAUUCAUUAACAUCUAUAUGUAUGUCGGCAAUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836048.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |||||||||*|=|||||||||||| targets:455   AGCAUUGCCUAUAUACAUAUAGAU   478 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence	NA	coding protein	psRNATarget
AK072517.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |||||||||*=||||||||||||| targets:1332   AGCAUUGCCCGCAUACAUAUAGAU   1355 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
XM_015757225.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |||||||||*||||*||||||||| targets:2296   AGCAUUGCCCACAUUCAUAUAGAU   2319 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA	pentatricopeptide repeat-containing protein At1g08610(LOC4348896)	coding protein	psRNATarget
XM_015766247.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |||||||||*||||*||||||||| targets:2504   AGCAUUGCCCACAUUCAUAUAGAU   2527 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA	putative receptor protein kinase ZmPK1(LOC107277300)	coding protein	psRNATarget
AK103437.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |||||||||*||||*||||||||| targets:2368   AGCAUUGCCCACAUUCAUAUAGAU   2391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence	NA	coding protein	psRNATarget
CT837804.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |*|||||||*||||*||||||||| targets:879   AUCAUUGCCUACAUUCAUAUAGAU   902 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence	NA	coding protein	psRNATarget
AK288932.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |*|||||||*||||*||||||||| targets:2981   AACAUUGCCUACAUUCAUAUAGAU   3004 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence	NA	coding protein	psRNATarget
AK067660.1	ncRNA:24   UCGUAACGGCUGUAUGUAUAUCUA   1   |*=||||||*||||||||*||||| targets:2716   AAUAUUGCCCACAUACAUUUAGAU   2739 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence	NA	coding protein	psRNATarget