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BaseInfo

ncRNA ID novel_osa_miR3062
Species Oryza sativa
Class miRNA
Genome position Chr8:13744169-13744256 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2040394;SRR2040397;SRR1298758;SRR1555749;SRR2040411;SRR2097778;SRR2097779;SRR2098557;SRR2098560;SRR2098823;SRR1555751;SRR2099436;SRR2099567;SRR2099745;SRR2099746;SRR1556011;SRR2458631;SRR4407954;SRR4407955;SRR4407957;SRR1556016;SRR4407960;SRR4407961;SRR4407962;SRR1556018;SRR5351742;SRR1298766;SRR1556020;SRR1654490;SRR1654491;SRR1300837;SRR1738217
Length 24
Mature sequence(if miRNA) 1 - AUCUAUAUGAUUGUGGGCAAUGCU - 24
Stem-loop(if miRNA) --           U G         C           G     U
  CAUUGCCCACA U AUAUAGAUG UAAUGAAUCUA ACAUA A
  ||||||||||| | ||||||||| ||||||||||| |||||
  GUAACGGGUGU A UAUAUCUAC AUUACUUGGAU UGUGU U
UC           U G         A           A     A
Stem-loop sequence CAUUGCCCACAUUGAUAUAGAUGCUAAUGAAUCUAGACAUAUAUAUGUGUAUAGGUUCAUUAACAUCUAUAUGAUUGUGGGCAAUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015757225.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||||||||*||||||||||
targets:2296   AGCAUUGCCCACAUUCAUAUAGAU   2319

1.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA pentatricopeptide repeat-containing protein At1g08610(LOC4348896) coding protein psRNATarget
XM_015766247.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||||||||*||||||||||
targets:2504   AGCAUUGCCCACAUUCAUAUAGAU   2527

1.5 PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA putative receptor protein kinase ZmPK1(LOC107277300) coding protein psRNATarget
AK103437.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||||||||*||||||||||
targets:2368   AGCAUUGCCCACAUUCAUAUAGAU   2391

1.5 Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence NA coding protein psRNATarget
AK073522.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:2496   AGCAUUGUCCACAUUCAUAUAGAU   2519

2.5 Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence NA coding protein psRNATarget
AK288796.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  ||||||||||=||*||||||||||
targets:772   AGCAUUGCCCGCAUUCAUAUAGAU   795

2.5 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
XM_015767218.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:3707   AGCAUUGUCCACAUUCAUAUAGAU   3730

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767215.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:3803   AGCAUUGUCCACAUUCAUAUAGAU   3826

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767217.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:3862   AGCAUUGUCCACAUUCAUAUAGAU   3885

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767212.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:3929   AGCAUUGUCCACAUUCAUAUAGAU   3952

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767214.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:3958   AGCAUUGUCCACAUUCAUAUAGAU   3981

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767211.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |||||||=|||||*||||||||||
targets:4025   AGCAUUGUCCACAUUCAUAUAGAU   4048

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
AK099933.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  ||||||*||||||||||||||*||
targets:362   AGCAUUACCCACAAUCAUAUAUAU   385

2.5 Oryza sativa Japonica Group cDNA clone:J013119E02, full insert sequence NA coding protein psRNATarget
CT837804.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |*|||||||=|||*||||||||||
targets:879   AUCAUUGCCUACAUUCAUAUAGAU   902

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence NA coding protein psRNATarget
XM_015755177.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |*|||||=|||||*||||||||||
targets:1760   ACCAUUGUCCACAUUCAUAUAGAU   1783

2.5 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA glutathione S-transferase T3(LOC4346703) coding protein psRNATarget
AK288932.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |*|||||||=|||*||||||||||
targets:2981   AACAUUGCCUACAUUCAUAUAGAU   3004

2.5 Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence NA coding protein psRNATarget
AK243435.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |*=||||=|||||*||||||||||
targets:1713   AAUAUUGUCCACAUUCAUAUAGAU   1736

2.5 Oryza sativa Japonica Group cDNA, clone: J100068A12, full insert sequence NA coding protein psRNATarget
XM_015755175.1
ncRNA:24   UCGUAACGGGUGUUAGUAUAUCUA   1
  |*=||||=|||||*||||||||||
targets:1723   AAUAUUGUCCACAUUCAUAUAGAU   1746

2.5 PREDICTED: Oryza sativa Japonica Group cytochrome P450 76M5-like (LOC4347207), mRNA cytochrome P450 76M5-like(LOC4347207) coding protein psRNATarget
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