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BaseInfo

ncRNA ID novel_osa_miR3058
Species Oryza sativa
Class miRNA
Genome position Chr2:12276198-12276338 [-]
Reference genome IRGSP-1.0
Source SRR2040384
Length 24
Mature sequence(if miRNA) 118 - AAAUUACGGCCCGUCACUGAUAGG - 141
Stem-loop(if miRNA) --     AC          UG    GUG     C    C     CC     G                UGG
  AAAUU  GGCCCGUCAC  AUAG   UUAUC GUGA GGGCU  AAUUU AGGCCCGAUUGAGAUA   A
  |||||  ||||||||||  ||||   ||||| |||| |||||  ||||| ||||||||||||||||
  UUUGA  UUGGGCAGUG  UAUU   GAUAG CACU CCCGG  UUAAA UCCGGGCUAACUCUAU   A
AU     GU          CG    GUG     U    A     CA     -                UGU
Stem-loop sequence AAAUUACGGCCCGUCACUGAUAGGUGUUAUCCGUGACGGGCUCCAAUUUGAGGCCCGAUUGAGAUAUGGAAUGUUAUCUCAAUCGGGCCUAAAUUACGGCCCAUCACUGAUAGGUGUUAUGCGUGACGGGUUUGAGUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK119390.1
ncRNA:24   GGAUAGUCACUGCCCGGCAUUAAA   1
  ||||||||||||||||||||=|||
targets:2978   CCUAUCAGUGACGGGCCGUAGUUU   3001

1.5 Oryza sativa Japonica Group cDNA clone:001-132-C09, full insert sequence NA coding protein psRNATarget