ncRNA ID | novel_osa_miR3058 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:12276198-12276338 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR2040384 |
Length | 24 |
Mature sequence(if miRNA) | 118 - AAAUUACGGCCCGUCACUGAUAGG - 141 |
Stem-loop(if miRNA) |
--     AC          UG    GUG     C    C     CC     G                UGG   AAAUU  GGCCCGUCAC  AUAG   UUAUC GUGA GGGCU  AAUUU AGGCCCGAUUGAGAUA   A   |||||  ||||||||||  ||||   ||||| |||| |||||  ||||| ||||||||||||||||   UUUGA  UUGGGCAGUG  UAUU   GAUAG CACU CCCGG  UUAAA UCCGGGCUAACUCUAU   A AU     GU          CG    GUG     U    A     CA     -                UGU |
Stem-loop sequence | AAAUUACGGCCCGUCACUGAUAGGUGUUAUCCGUGACGGGCUCCAAUUUGAGGCCCGAUUGAGAUAUGGAAUGUUAUCUCAAUCGGGCCUAAAUUACGGCCCAUCACUGAUAGGUGUUAUGCGUGACGGGUUUGAGUUUUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK119390.1 |
|
1.5 | Oryza sativa Japonica Group cDNA clone:001-132-C09, full insert sequence | NA | coding protein | psRNATarget |