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BaseInfo

ncRNA ID	novel_osa_miR3057
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:13989149-13989371 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	22
Mature sequence(if miRNA)	202 - UUAGAAUUAUUAAACGUAGACU - 223
Stem-loop(if miRNA)	--      U       C   G               A   G     --A  A  G UAA    C     A     U  A             C  A     CAC    UUACU   UUAGAA UAUUAAA GUA ACUAAUAAUAAAACU AUU CAUAA   UG GA U   UUCG GAGAC AAUUU UU AGCCUAAUUAAUC AU AUUAG   AUGU     G   |||||| ||||||| ||| ||||||||||||||| ||| |||||   || || |   |||| ||||| ||||| || ||||||||||||| || |||||   ||||     U   AAUCUU AUAAUUU CAU UGAUUAUUGUUUUGA UAA GUAUU   AC CU A   AAGC CUCUG UUAGA AA UCGGAUUAAUUAG UA UAAUC   UACA     A GU      C       A   G               G   G     GGA  -  G -UG    A     C     U  C             A  C     AGA    UUACG
Stem-loop sequence	UUAGAAUUAUUAAACGUAGACUAAUAAUAAAACUAAUUGCAUAAAUGAGAGUUAAUUCGCGAGACAAAUUUUUUAAGCCUAAUUAAUCCAUAAUUAGCACAUGUUUACUGUAGCAUUACAUAGACUAAUCAUAGAUUAAUUAGGCUCAAUAGAUUCGUCUCACGAAGUAGUCCAAGGUUAUGGAAUGAGUUUUGUUAUUAGUGUACAUUUAAUACUUCUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:22   UCAGAUGCAAAUUAUUAAGAUU   1   |||||||||||||||*|||||| targets:1898   AGUCUACGUUUAAUACUUCUAA   1919 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
CT836037.1	ncRNA:22   UCAGAUGCAAAUUAUUAAGAUU   1   **|||||||||||||*|||||| targets:294   UCUCUACGUUUAAUACUUCUAA   315 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067F22, full insert sequence	NA	coding protein	psRNATarget
CT836034.1	ncRNA:22   UCAGAUGCAAAUUAUUAAGAUU   1   **|||||||||||||*|||||| targets:294   UCUCUACGUUUAAUACUUCUAA   315 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN059O07, full insert sequence	NA	coding protein	psRNATarget
CT836983.1	ncRNA:22   UCAGAUGCAAAUUAUUAAGAUU   1   |*|**||||||||||||||||| targets:1470   AUUAAACGUUUAAUAAUUCUAA   1491 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F09, full insert sequence	NA	coding protein	psRNATarget