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BaseInfo

ncRNA ID novel_osa_miR3056
Species Oryza sativa
Class miRNA
Genome position Chr2:16992741-16992850 [-]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2040407;SRR2040408
Length 22
Mature sequence(if miRNA) 89 - AAACUUUCUAGCAUUACCCAUA - 110
Stem-loop(if miRNA) --           C   A       U   UCA             C  A     U
  AAACUUUCUAG AUU CCCAUAU CAU   GAUGUUAAUGAAU UA ACACA A
  ||||||||||| ||| ||||||| |||   ||||||||||||| || |||||
  UUUGAAAGAUC UAA GGGUGUA GUG   CUACAAUUAUUUA AU UGUGU U
AU           A   C       U   UAC             A  C     A
Stem-loop sequence AAACUUUCUAGCAUUACCCAUAUUCAUUCAGAUGUUAAUGAAUCUAAACACAUAUAUGUGUCUAAAUUUAUUAACAUCCAUGUGUAUGUGGGCAAUACUAGAAAGUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK071758.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |||||||||||||||||||||*
targets:866   UAUGGGUAAUGCUAGAAAGUUA   887

1.0 Oryza sativa Japonica Group cDNA clone:J023112J01, full insert sequence NA coding protein psRNATarget
XM_015792379.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |||||||||||||||||||||*
targets:878   UAUGGGUAAUGCUAGAAAGUUA   899

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g14100 (LOC4342613), mRNA uncharacterized protein At4g14100(LOC4342613) coding protein psRNATarget
XM_015763411.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  ||||||||||||||||||*|||
targets:1230   UAUGGGUAAUGCUAGAAAUUUU   1251

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327906 (LOC4327906), mRNA uncharacterized LOC4327906(LOC4327906) coding protein psRNATarget
AK104174.1
ncRNA:22   AUACCCAUUACGAUCUUUCA-AA   1
  |=||||||||||||||||||-||
targets:749   UGUGGGUAAUGCUAGAAAGUCUU   771

3.0 Oryza sativa Japonica Group cDNA clone:006-301-C05, full insert sequence NA coding protein psRNATarget
AK067462.1
ncRNA:22   AUACCCAUUACGAUCUUUCA-AA   1
  |=||||||||||||||||||-||
targets:750   UGUGGGUAAUGCUAGAAAGUCUU   772

3.0 Oryza sativa Japonica Group cDNA clone:J013102C12, full insert sequence NA coding protein psRNATarget
AK071843.1
ncRNA:22   AUACCCAUUACGAUCUUUCA-AA   1
  |=||||||||||||||||||-||
targets:884   UGUGGGUAAUGCUAGAAAGUCUU   906

3.0 Oryza sativa Japonica Group cDNA clone:J023117M08, full insert sequence NA coding protein psRNATarget
CT834453.1
ncRNA:22   AUACCCAUUACGAUCUUUCA-AA   1
  |=||||||||||||||||||-||
targets:882   UGUGGGUAAUGCUAGAAAGUCUU   904

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115M14, full insert sequence NA coding protein psRNATarget
XM_015772707.1
ncRNA:22   AUACCCAUUACGAUCUUUCA-AA   1
  |=||||||||||||||||||-||
targets:1075   UGUGGGUAAUGCUAGAAAGUCUU   1097

3.0 PREDICTED: Oryza sativa Japonica Group protein ELF4-LIKE 3 (LOC4333090), mRNA protein ELF4-LIKE 3(LOC4333090) coding protein psRNATarget
AK066417.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=||||*|||||||||||||||
targets:2319   UGUGGGCAAUGCUAGAAAGUUU   2340

1.0 Oryza sativa Japonica Group cDNA clone:J013067F20, full insert sequence NA coding protein psRNATarget
XM_015788424.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=||||*|||||||||||||||
targets:2684   UGUGGGCAAUGCUAGAAAGUUU   2705

1.0 PREDICTED: Oryza sativa Japonica Group protein NSP-INTERACTING KINASE 1 (LOC4340743), mRNA protein NSP-INTERACTING KINASE 1(LOC4340743) coding protein psRNATarget
AK099807.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=||||*|||||||||||||||
targets:3090   UGUGGGCAAUGCUAGAAAGUUU   3111

1.0 Oryza sativa Japonica Group cDNA clone:J013098H04, full insert sequence NA coding protein psRNATarget
XM_015769902.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |||||*||||*|||||||||||
targets:1251   UAUGGAUAAUACUAGAAAGUUU   1272

2.5 PREDICTED: Oryza sativa Japonica Group putative methyltransferase DDB_G0268948 (LOC107278642), mRNA putative methyltransferase DDB_G0268948(LOC107278642) coding protein psRNATarget
AK242153.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|||**|||||||||||||||
targets:1123   UGUGGACAAUGCUAGAAAGUUU   1144

2.0 Oryza sativa Japonica Group cDNA, clone: J075153O10, full insert sequence NA coding protein psRNATarget
XM_015760503.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=||*|*|||||||||||||||
targets:2476   UGUGAGCAAUGCUAGAAAGUUU   2497

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277162 (LOC107277162), transcript variant X1, mRNA uncharacterized LOC107277162(LOC107277162) coding protein psRNATarget
AK242012.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=||||*|||||||*|||||||
targets:755   UGUGGGCAAUGCUAAAAAGUUU   776

2.5 Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence NA coding protein psRNATarget
XM_015759295.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|*|=||||||||||||||
targets:253   UGUUGUUGAUGCUAGAAAGUUU   274

3.0 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g55270 (LOC4348597), mRNA F-box/kelch-repeat protein At1g55270(LOC4348597) coding protein psRNATarget
CT828067.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|*|=||||||||||||||
targets:261   UGUUGUUGAUGCUAGAAAGUUU   282

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230A12, full insert sequence NA coding protein psRNATarget
AK068671.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|*|=||||||||||||||
targets:217   UGUUGUUGAUGCUAGAAAGUUU   238

3.0 Oryza sativa Japonica Group cDNA clone:J013158J20, full insert sequence NA coding protein psRNATarget
AK066822.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|**|||||||||||||||
targets:566   UGUAGACAAUGCUAGAAAGUUU   587

3.0 Oryza sativa Japonica Group cDNA clone:J013077F20, full insert sequence NA coding protein psRNATarget
XM_015794006.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|**|||||||||||||||
targets:1253   UGUAGACAAUGCUAGAAAGUUU   1274

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X5, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794003.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|**|||||||||||||||
targets:1328   UGUAGACAAUGCUAGAAAGUUU   1349

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X2, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794005.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|**|||||||||||||||
targets:1373   UGUAGACAAUGCUAGAAAGUUU   1394

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X4, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794002.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|**|||||||||||||||
targets:1385   UGUAGACAAUGCUAGAAAGUUU   1406

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X1, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794004.1
ncRNA:22   AUACCCAUUACGAUCUUUCAAA   1
  |=|*|**|||||||||||||||
targets:1401   UGUAGACAAUGCUAGAAAGUUU   1422

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X3, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
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