Search result

BaseInfo

ncRNA ID novel_osa_miR3054
Species Oryza sativa
Class miRNA
Genome position Chr2:18238705-18238876 [-]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2040389;SRR2040390;SRR2857729
Length 22
Mature sequence(if miRNA) 151 - UUUUUAUUUGUAUUGUUUGACC - 172
Stem-loop(if miRNA) --     A                                      ---------------------   CAAAUAUAAAAUACGAAAAUUGUGCU
  UUUUU UUUGUAUUGUUUGACCAUUCGUCUUAUUCAAAAAAUUU                     GUG                          U
  ||||| ||||||||||||||||||||||||||||||||||||||                     |||                          A
  AAAAA AAAUAUGACAAACUGGUGAGCAGAAUAAGUUUUUUAAA                     AAC                          A
UC     C                                      AUCUUAAUAAUAAAUAAAAAA   ACUGAAUGAAAUAAUAGAUUUCAUGA
Stem-loop sequence UUUUUAUUUGUAUUGUUUGACCAUUCGUCUUAUUCAAAAAAUUUGUGCAAAUAUAAAAUACGAAAAUUGUGCUUAAAGUACUUUAGAUAAUAAAGUAAGUCACAAAAAAAAUAAAUAAUAAUUCUAAAAUUUUUUGAAUAAGACGAGUGGUCAAACAGUAUAAACAAAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK109584.1
ncRNA:22   CCAGUUUGUUAUGUUUAUUUUU   1
  |||||||||*||||||||||||
targets:1116   GGUCAAACAUUACAAAUAAAAA   1137

1.5 Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence NA coding protein psRNATarget
AK288977.1
ncRNA:22   CCAGUUUGUUAUGUUUAUUUUU   1
  ||||||||||||||||*|||||
targets:1829   GGUCAAACAAUACAAACAAAAA   1850

1.5 Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence NA coding protein psRNATarget
CT837700.1
ncRNA:22   CCAGUUUGUUAUGUUUAUUUUU   1
  **|||||*|=||||||||||||
targets:727   CCUCAAAAAGUACAAAUAAAAA   748

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120G20, full insert sequence NA coding protein psRNATarget
AK073387.1
ncRNA:22   CCAGUUUGUUAUGUUUAUUUUU   1
  **|=|=|*||||||||||||||
targets:1123   UUUUAGAAAAUACAAAUAAAAA   1144

3.0 Oryza sativa Japonica Group cDNA clone:J033043K11, full insert sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.