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BaseInfo

ncRNA ID novel_osa_miR3049
Species Oryza sativa
Class miRNA
Genome position Chr8:16825962-16826008 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 22
Mature sequence(if miRNA) 26 - CAAGGCGCGGUAUCAUGAGGAC - 47
Stem-loop(if miRNA) --C      C  -    -   A  A
   AAGGCG GG UAUC AUG GG C
   |||||| || |||| ||| ||
   UUCCGC CC GUAG UAC CC C
CCC      -  U    C   A  A
Stem-loop sequence CAAGGCGCGGUAUCAUGAGGACCACCACAUCGAUGUCCCGCCUUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287440.1
ncRNA:22   CAGGAGUACUAUGGCGCGGAAC   1
  ||=||*||||||||||||*|||
targets:1592   GUUCUGAUGAUACCGCGCAUUG   1613

2.5 Oryza sativa Japonica Group cDNA, clone: J043015B19, full insert sequence NA coding protein psRNATarget