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BaseInfo

ncRNA ID	novel_osa_miR3044
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:17553983-17554047 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR1556016;SRR5049789;SRR5049791;SRR5049793;SRR1556020;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	42 - AGCAUUUGUAGGAAGUUUAAUGGA - 65
Stem-loop(if miRNA)	--   A                 -  A   AUA   AGC UUUGUAGGAAGUUUAAU GG CUU   U   ||| ||||||||||||||||| || |||   A   UCG AAAUAUCUUUCAAAUUA CC GAA   C UU   C                 A  -   AAU
Stem-loop sequence	AGCAUUUGUAGGAAGUUUAAUGGACUUAUAUACUAAAAGCCAAUUAAACUUUCUAUAAACGCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015760101.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   |||||||||||||||||||||||| targets:3262   UCCAUUAAACUUCCUACAAAUGCU   3285 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4350815), mRNA	putative disease resistance RPP13-like protein 3(LOC4350815)	coding protein	psRNATarget
AK107069.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||=||||||||||||||||||||| targets:570   UCUAUUAAACUUCCUACAAAUGCU   593 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-121-E09, full insert sequence	NA	coding protein	psRNATarget
AK288484.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||||||||||||||*||| targets:2141   UCCAUUAAACUUCCUACAAACGCU   2164 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090040D01, full insert sequence	NA	coding protein	psRNATarget
AK288484.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||||||||||||||*||| targets:2650   UCCAUUAAACUUCCUACAAACGCU   2673 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090040D01, full insert sequence	NA	coding protein	psRNATarget
AK072169.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||||||||||||||*||| targets:1029   UCCAUUAAACUUCCUACAAACGCU   1052 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013132E11, full insert sequence	NA	coding protein	psRNATarget
AK120281.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||||||||||||||*||| targets:1097   UCCAUUAAACUUCCUACAAACGCU   1120 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence	NA	coding protein	psRNATarget
AK288243.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   |||||||||=||||||||||*||| targets:1586   UCCAUUAAAUUUCCUACAAACGCU   1609 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090014A15, full insert sequence	NA	coding protein	psRNATarget
AK288243.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||=|||||||||||||||||||*| targets:2340   UCUAUUAAACUUCCUACAAAUGAU   2363 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090014A15, full insert sequence	NA	coding protein	psRNATarget
XM_015777958.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   |*=|||||||||=||||||||||| targets:2533   UAUAUUAAACUUUCUACAAAUGCU   2556 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein argonaute 2-like (LOC107280497), transcript variant X2, mRNA	protein argonaute 2-like(LOC107280497)	coding protein	psRNATarget
XM_015777958.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||||*|||||||||*||| targets:1952   UCCAUUAAACAUCCUACAAACGCU   1975 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein argonaute 2-like (LOC107280497), transcript variant X2, mRNA	protein argonaute 2-like(LOC107280497)	coding protein	psRNATarget
XM_015777957.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   |*=|||||||||=||||||||||| targets:2659   UAUAUUAAACUUUCUACAAAUGCU   2682 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein argonaute 2-like (LOC107280497), transcript variant X1, mRNA	protein argonaute 2-like(LOC107280497)	coding protein	psRNATarget
XM_015777957.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||||*|||||||||*||| targets:2078   UCCAUUAAACAUCCUACAAACGCU   2101 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein argonaute 2-like (LOC107280497), transcript variant X1, mRNA	protein argonaute 2-like(LOC107280497)	coding protein	psRNATarget
AK288707.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   |||||*||||||||||||||*||| targets:1715   UCCAUCAAACUUCCUACAAACGCU   1738 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061M09, full insert sequence	NA	coding protein	psRNATarget
AK288550.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ||||||||*|||||||||||*||| targets:2941   UCCAUUAAUCUUCCUACAAACGCU   2964 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046L08, full insert sequence	NA	coding protein	psRNATarget
AK288550.1	ncRNA:24   AGGUAAUUUGAAGGAUGUUUACGA   1   ***=*|||||||||||||||*||| targets:3950   GAGGAUAAACUUCCUACAAACGCU   3973 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090046L08, full insert sequence	NA	coding protein	psRNATarget