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BaseInfo

ncRNA ID	novel_osa_miR3043
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:7119622-7119683 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	21
Mature sequence(if miRNA)	1 - UUCAUUGUAUUAGGAUAUGUC - 21
Stem-loop(if miRNA)	--  C                 C      AA   CA AUUCUAGUACAAUGAAU UGGACA  U   || ||||||||||||||||| ||||||   GU UAGGAUUAUGUUACUUA ACUUGU  G CU  A                 U      AU
Stem-loop sequence	CACAUUCUAGUACAAUGAAUCUGGACAAAUGUAUGUUCAUAUUCAUUGUAUUAGGAUAUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404157.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   |||||||=|||||||||*||| targets:16   GACAUAUUCUAAUACAACGAA   36 Target Full Sequence	2.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   |||||||=|||||||||*||| targets:16   GACAUAUUCUAAUACAACGAA   36 Target Full Sequence	2.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   |||||||=|||||||||*||| targets:16   GACAUAUUCUAAUACAACGAA   36 Target Full Sequence	2.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
CT835671.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   ||||*|||||||||=|||||| targets:1117   GACACAUCCUAAUAUAAUGAA   1137 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128D09, full insert sequence	NA	coding protein	psRNATarget
XM_015795930.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   |||||||=|||||||*||||| targets:1548   GACAUAUUCUAAUACUAUGAA   1568 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ankyrin repeat domain-containing protein 50 (LOC4346431), mRNA	ankyrin repeat domain-containing protein 50(LOC4346431)	coding protein	psRNATarget
HI403967.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *|||*||||||=||||||||| targets:21   AACACAUCCUAGUACAAUGAA   41 Target Full Sequence	2.5	Sequence 2092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236097.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *|||*||||||=||||||||| targets:21   AACACAUCCUAGUACAAUGAA   41 Target Full Sequence	2.5	Sequence 2092 from Patent EP2985353	NA	coding protein	psRNATarget
JB164428.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *|||*||||||=||||||||| targets:21   AACACAUCCUAGUACAAUGAA   41 Target Full Sequence	2.5	Sequence 2092 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015758453.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *||||||*||=|||||||||| targets:858   AACAUAUGCUGAUACAAUGAA   878 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group vacuolar protein sorting-associated protein 52 A (LOC4348958), transcript variant X3, mRNA	vacuolar protein sorting-associated protein 52 A(LOC4348958)	coding protein	psRNATarget
XM_015758452.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *||||||*||=|||||||||| targets:858   AACAUAUGCUGAUACAAUGAA   878 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group vacuolar protein sorting-associated protein 52 A (LOC4348958), transcript variant X2, mRNA	vacuolar protein sorting-associated protein 52 A(LOC4348958)	coding protein	psRNATarget
XM_015758451.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *||||||*||=|||||||||| targets:944   AACAUAUGCUGAUACAAUGAA   964 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group vacuolar protein sorting-associated protein 52 A (LOC4348958), transcript variant X1, mRNA	vacuolar protein sorting-associated protein 52 A(LOC4348958)	coding protein	psRNATarget
AK100635.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *||||||*||=|||||||||| targets:946   AACAUAUGCUGAUACAAUGAA   966 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023110C18, full insert sequence	NA	coding protein	psRNATarget
XM_015773346.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   |||||*|||||||||||*||| targets:1359   GACAUUUCCUAAUACAACGAA   1379 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 4 (LOC4333698), mRNA	homeobox protein knotted-1-like 4(LOC4333698)	coding protein	psRNATarget
AK288260.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   ||||*||||||||||||||*| targets:1781   GACACAUCCUAAUACAAUGUA   1801 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090015P03, full insert sequence	NA	coding protein	psRNATarget
XM_015785407.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   ||||*||||||||||||*||| targets:1696   GACACAUCCUAAUACAACGAA   1716 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitochondrial phosphate carrier protein 3, mitochondrial (LOC4340459), mRNA	mitochondrial phosphate carrier protein 3, mitochondrial(LOC4340459)	coding protein	psRNATarget
XM_015778240.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   ||||*||*||||||||||||| targets:871   GACACAUACUAAUACAAUGAA   891 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g13880 (LOC9267950), mRNA	pentatricopeptide repeat-containing protein At3g13880(LOC9267950)	coding protein	psRNATarget
XM_015760081.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *=||*|||||||||=|||||| targets:378   AGCAAAUCCUAAUAUAAUGAA   398 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group short integuments 2, mitochondrial (LOC4350437), mRNA	short integuments 2, mitochondrial(LOC4350437)	coding protein	psRNATarget
AK108044.1	ncRNA:21   CUGUAUAGGAUUAUGUUACUU   1   *=||*|||||||||=|||||| targets:383   AGCAAAUCCUAAUAUAAUGAA   403 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-137-E01, full insert sequence	NA	coding protein	psRNATarget