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BaseInfo

ncRNA ID	novel_osa_miR3042
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8021834-8021969 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	25
Mature sequence(if miRNA)	112 - GUUUCACAACGUAAGACUUUCUAGC - 136
Stem-loop(if miRNA)	--         C      C           AU   C  U   U                  G     U   GUUUCACAA GUAAGA UUUCUAGCAUU  CCA AU UAU UAGAUGUUAAUGAAUCUA ACAUA G   ||||||||| |||||| |||||||||||  ||| || ||| |||||||||||||||||| |||||   CAAAGUGUU CAUUCU AAAGAUCGUAA  GGU UA GUA AUCUACAAUUACUUAGAU UGUGU U GG         A      A           CG   A  U   U                  G     A
Stem-loop sequence	GUUUCACAACGUAAGACUUUCUAGCAUUAUCCACAUUUAUUUAGAUGUUAAUGAAUCUAGACAUAUGUAUGUGUGUAGAUUCAUUAACAUCUAUAUGUAUAUGGGCAAUGCUAGAAAAUCUUACAUUGUGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836330.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:917   GCUAGAAAGUCUUACAUUGUGAAAC   941 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence	NA	coding protein	psRNATarget
AK241537.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:919   GCUAGAAAGUCUUACAUUGUGAAAC   943 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence	NA	coding protein	psRNATarget
XM_015795868.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:1257   GCUAGAAAGUCUUACAUUGUGAAAC   1281 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA	uncharacterized LOC107277671(LOC107277671)	coding protein	psRNATarget
XM_015785143.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:1813   GCUAGAAAGUCUUACAUUGUGAAAC   1837 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266451 (LOC9266451), mRNA	uncharacterized LOC9266451(LOC9266451)	coding protein	psRNATarget
AK072517.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:1419   GCUAGAAAGUCUUACAUUGUGAAAC   1443 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
AK101666.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:1695   GCUAGAAAGUCUUACAUUGUGAAAC   1719 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence	NA	coding protein	psRNATarget
AK288932.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:3068   GCUAGAAAGUCUUACAUUGUGAAAC   3092 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence	NA	coding protein	psRNATarget
XM_015766553.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:624   GCUAGAAAGUCUUACAUUGUGAAAC   648 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:1814   GCUAGAAAGUCUUACAUUGUGAAAC   1838 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:2428   GCUAGAAAGUCUUACAUUGUGAAAC   2452 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:2794   GCUAGAAAGUCUUACAUUGUGAAAC   2818 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:2794   GCUAGAAAGUCUUACAUUGUGAAAC   2818 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766546.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||| targets:2794   GCUAGAAAGUCUUACAUUGUGAAAC   2818 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
AK059715.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||||||||*||||||||= targets:127   GCUAGAAAGUCUUACAUUGUGAAAU   151 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
AK103229.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |=|||||||||||||*||||||||| targets:501   GUUAGAAAGUCUUACAUUGUGAAAC   525 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033123D06, full insert sequence	NA	coding protein	psRNATarget
AK067660.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |=|||||||||||||*||||||||| targets:2798   GUUAGAAAGUCUUACAUUGUGAAAC   2822 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence	NA	coding protein	psRNATarget
CT837593.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||*|*||||||||||||||| targets:187   GCUAGAAUGACUUACGUUGUGAAAC   211 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122C23, full insert sequence	NA	coding protein	psRNATarget
AK103374.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||*|*||||||||||||||| targets:757   GCUAGAAUGACUUACGUUGUGAAAC   781 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033127B09, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||||*|||||*||||||||| targets:4336   GCUAGAAAGCCUUACAUUGUGAAAC   4360 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
AK100834.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |=|||||*|*||||||||||||||| targets:1606   GUUAGAAUGACUUACGUUGUGAAAC   1630 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023123D17, full insert sequence	NA	coding protein	psRNATarget
CT831791.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |||||||*|*||||||||||||||* targets:1856   GCUAGAAUGACUUACGUUGUGAAAA   1880 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241K23, full insert sequence	NA	coding protein	psRNATarget
AK119344.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |*|||||||||||||*||||||||* targets:1260   GGUAGAAAGUCUUACAUUGUGAAAG   1284 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence	NA	coding protein	psRNATarget
AK289050.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |=|||||*|*||||||||||||||= targets:2941   GUUAGAAUGACUUACGUUGUGAAAU   2965 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence	NA	coding protein	psRNATarget
XM_015779139.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |*||*||||||||||*||||||||| targets:1012   GGUAAAAAGUCUUACAUUGUGAAAC   1036 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 7 (LOC4336128), mRNA	fasciclin-like arabinogalactan protein 7(LOC4336128)	coding protein	psRNATarget
AK110545.1	ncRNA:25   CGAUCUUUCAGAAUGCAACACUUUG   1   |*||*||||||||||*||||||||| targets:1018   GGUAAAAAGUCUUACAUUGUGAAAC   1042 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-168-B08, full insert sequence	NA	coding protein	psRNATarget