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BaseInfo

ncRNA ID	novel_osa_miR3041
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:21781558-21781702 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040389;SRR2040401;SRR2040411;SRR2857732;SRR2857733
Length	24
Mature sequence(if miRNA)	122 - AUUACCAAUCGGGACUAAAGAUCC - 145
Stem-loop(if miRNA)	--AU           A         -    U    U    C       A                      AU     UACCAAUCGGG CUAAAGAUC CCGG GAUC UUAG CCCGGUU GUGUUACCAACCGGGACUAAAG  C     ||||||||||| ||||||||| |||| |||| |||| ||||||| ||||||||||||||||||||||  U     GUGGUUGGCCC GAUUUCUAG GGCC CUAG AAUC GGGCCAA CAUAAUGGUUGGCCCUGAUUUC  U CAUC           C         U    -    U    A       C                      AA
Stem-loop sequence	AUUACCAAUCGGGACUAAAGAUCCCGGUGAUCUUUAGCCCCGGUUAGUGUUACCAACCGGGACUAAAGAUCUUAACUUUAGUCCCGGUUGGUAAUACCAACCGGGACUAAUGAUCCCGGUGAUCUUUAGCCCCGGUUGGUGCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164982.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   *||||||||||||||||||||||| targets:122   UGAUCUUUAGUCCCGAUUGGUAAU   145 Target Full Sequence	0.0	Sequence 2646 from Patent EP2559767	NA	coding protein	psRNATarget
HI404521.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   *||||||||||||||||||||||| targets:122   UGAUCUUUAGUCCCGAUUGGUAAU   145 Target Full Sequence	0.0	Sequence 2646 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236651.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   *||||||||||||||||||||||| targets:122   UGAUCUUUAGUCCCGAUUGGUAAU   145 Target Full Sequence	0.0	Sequence 2646 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   |||||||||||||||=|||||||* targets:1699   GGAUCUUUAGUCCCGGUUGGUAAC   1722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   *||||||||||||||=|||||||* targets:142   UGAUCUUUAGUCCCGGUUGGUAAC   165 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK289098.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   *||||||||||||||=|||||||* targets:237   AGAUCUUUAGUCCCGGUUGGUAAC   260 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   *||||||||||||||=|||||||* targets:46   UGAUCUUUAGUCCCGGUUGGUAAC   69 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   **|||||||||||||=|||||||* targets:2362   AAAUCUUUAGUCCCGGUUGGUAAC   2385 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   |||-|||||||||||=|||||||* targets:943   GGA-CUUUAGUCCCGGUUGGUAAG   965 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUA   1   **||||||||*||||=|||||||| targets:1368   CCAUCUUUAGCCCCGGUUGGUAAU   1391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget