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BaseInfo

ncRNA ID	ath-miR4221
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:8460516-8460662 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	21 - UUUUCCUCUGUUGAAUUCUUGC - 42
Stem-loop(if miRNA)	UAGUAUAUCCGUUUCAC      U  U  G              U    UU  -U    -G -   - UUAAGUUACAUGUG                  AGUUUU CC CU UUGAAUUCUUGCAC AGCU  CA  AUGG  C CAU A              G                  |||||| || || |||||||||||||| ||||  ||  ||||  | ||| |                  UCAAAG GG GA AAUUUGAGAACGUG UCGA  GU  UACC  C ACG G              G ---------------UU      U  U  A              U    UC  CU    AA G   U ACAAUGCCGUGGGU
Stem-loop sequence	UAGUAUAUCCGUUUCACAGUUUUUCCUCUGUUGAAUUCUUGCACUAGCUUUCAUAUGGGCCAUAUUAAGUUACAUGUGGGUGGGUGCCGUAACAGUGCAGCAACCAUUCUGCUAGCUUGUGCAAGAGUUUAAAAGUGGUGAAACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_117612.3	ncRNA:22   CGUUCUUAAGUUGUCUCCUUUU   1   **||||||||||*||||||||= targets:208   AGAAGAAUUCAAAAGAGGAAAG   229 Target Full Sequence	2.5	Arabidopsis thaliana glycosyltransferase (DUF604) mRNA	glycosyltransferase (DUF604)(AT4G15240)	coding protein	psRNATarget

Reference

1	PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"; Ma Z, Coruh C, Axtell MJ; Plant Cell. 22:1090-1103(2010).