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BaseInfo

ncRNA ID novel_osa_miR3039
Species Oryza sativa
Class miRNA
Genome position Chr8:18677866-18678058 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AAAAUCAACGGCGUCAUAUAUUAA - 24
Stem-loop(if miRNA) --             A    C    --    UUAUA             C           A   AA     UAUUUU      UUUAACAC       AAUU
  AAUAUAUGACGUC UUGA UUUU  UACA     UUUGGUCAUUUGU UUAUUCAAAAA UUU  GUAAA      UCUUGA        UAAAUGA    U
  ||||||||||||| |||| ||||  ||||     ||||||||||||| ||||||||||| |||  |||||      ||||||        |||||||
  UUAUAUACUGCGG AACU AAAA  AUGU     AAACUAGUAAGCA AAUAAGUUUUU AAA  CAUUU      AGAAUU        AUUUAUU    A
AA             C    A    CA    --UCA             A           A   CA     ------      ---UUUAU       ACGA
Stem-loop sequence AAUAUAUGACGUCAUUGACUUUUUACAUUAUAUUUGGUCAUUUGUCUUAUUCAAAAAAUUUAAGUAAAUAUUUUUCUUGAUUUAACACUAAAUGAAAUUUAAGCAUUAUUUAUAUUUUUAAGAUUUACACAAAAUUUUUGAAUAAAACGAAUGAUCAAAACUUGUAACAAAAAUCAACGGCGUCAUAUAUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK103228.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||=||||||||||
targets:2623   UUAAUGUAUGACGUCGUUGAUUUU   2646

2.5 Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence NA coding protein psRNATarget
AK289157.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  ||||||*|||||||||||||||||
targets:332   UUAAUAGAUGACGCCGUUGAUUUU   355

1.0 Oryza sativa Japonica Group cDNA, clone: J090099P09, full insert sequence NA coding protein psRNATarget
AK288385.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  ||||||*||||=||||||||||||
targets:3964   UUAAUAAAUGAUGCCGUUGAUUUU   3987

2.5 Oryza sativa Japonica Group cDNA, clone: J090027C04, full insert sequence NA coding protein psRNATarget
AK288521.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||||*||||||||
targets:55   UUAAUGUAUGACGCCAUUGAUUUU   78

2.5 Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence NA coding protein psRNATarget
CT835080.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=||||||||||||||*|||
targets:998   UUAAUGUAUGACGCCGUUGACUUU   1021

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence NA coding protein psRNATarget
XM_015768863.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||||*||||||||
targets:49   UUAAUGUAUGACGCCAUUGAUUUU   72

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA uncharacterized LOC107279962(LOC107279962) coding protein psRNATarget
XM_015790123.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||||*||||||||
targets:915   UUAAUGUAUGACGCCAUUGAUUUU   938

2.5 PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRB1-3-like (LOC107278128), mRNA pathogenesis-related protein PRB1-3-like(LOC107278128) coding protein psRNATarget
XM_015790118.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||||*||||||||
targets:915   UUAAUGUAUGACGCCAUUGAUUUU   938

2.5 PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRB1-3-like (LOC107278129), mRNA pathogenesis-related protein PRB1-3-like(LOC107278129) coding protein psRNATarget
XM_015790117.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||||*||||||||
targets:915   UUAAUGUAUGACGCCAUUGAUUUU   938

2.5 PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRB1-3 (LOC4342311), mRNA pathogenesis-related protein PRB1-3(LOC4342311) coding protein psRNATarget
AK060005.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=|||||||||*||||||||
targets:910   UUAAUGUAUGACGCCAUUGAUUUU   933

2.5 Oryza sativa Japonica Group cDNA clone:006-302-B02, full insert sequence NA coding protein psRNATarget
AK121277.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=||||||*|||||||||||
targets:708   UUAAUGUAUGACACCGUUGAUUUU   731

2.5 Oryza sativa Japonica Group cDNA clone:J023108A04, full insert sequence NA coding protein psRNATarget
XM_015779779.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |||||=||||||*|||||||||||
targets:552   UUAAUGUAUGACACCGUUGAUUUU   575

2.5 PREDICTED: Oryza sativa Japonica Group cytochrome c-like (LOC107278135), mRNA cytochrome c-like(LOC107278135) coding protein psRNATarget
XM_015790883.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  ||||||*|||||||||||*|||||
targets:3060   UUAAUAGAUGACGCCGUUAAUUUU   3083

2.5 PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA 7-deoxyloganetic acid glucosyltransferase(LOC9267967) coding protein psRNATarget
AK289089.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  ||||||*|||||||||||*|||||
targets:2599   UUAAUAGAUGACGCCGUUAAUUUU   2622

2.5 Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence NA coding protein psRNATarget
XM_015783460.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |*|||||*||||||||||||||||
targets:729   UAAAUAUUUGACGCCGUUGAUUUU   752

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278662 (LOC107278662), mRNA uncharacterized LOC107278662(LOC107278662) coding protein psRNATarget
AK288459.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |*|||||*||||||||||*|||||
targets:109   UAAAUAUUUGACGCCGUUAAUUUU   132

2.5 Oryza sativa Japonica Group cDNA, clone: J090035G07, full insert sequence NA coding protein psRNATarget
XM_015767700.1
ncRNA:24   AA---UUAUAUACUGCGGCAACUAAAA   1
  ||---|||||*||||*|||||||||||
targets:3574   UUCAAAAUAUUUGACACCGUUGAUUUU   3600

2.5 PREDICTED: Oryza sativa Japonica Group isoleucine--tRNA ligase, cytoplasmic (LOC9272464), mRNA isoleucine--tRNA ligase, cytoplasmic(LOC9272464) coding protein psRNATarget
XM_015770884.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |*|||||*||||*|||||||||||
targets:1810   UAAAUAUUUGACACCGUUGAUUUU   1833

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330735 (LOC4330735), transcript variant X1, mRNA uncharacterized LOC4330735(LOC4330735) coding protein psRNATarget
XM_015763948.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |*|||||*|*||||||||||||||
targets:1399   UAAAUAUUUAACGCCGUUGAUUUU   1422

2.0 PREDICTED: Oryza sativa Japonica Group probable inactive methyltransferase Os04g0175900 (LOC4351737), mRNA probable inactive methyltransferase Os04g0175900(LOC4351737) coding protein psRNATarget
AK064731.1
ncRNA:24   AAUUAUAUACUGCGGCAACUAAAA   1
  |*|||||*||||*|||||||||||
targets:939   UAAAUAUUUGACACCGUUGAUUUU   962

2.5 Oryza sativa Japonica Group cDNA clone:002-120-B08, full insert sequence NA coding protein psRNATarget
XM_015791299.1
ncRNA:24   AAUU--AUAUACUGCGGCAACUAAAA   1
  *|||--|||||*|||||*||||||||
targets:1101   AUAAGCUAUAUAACGCCAUUGAUUUU   1126

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325522 (LOC4325522), mRNA uncharacterized LOC4325522(LOC4325522) coding protein psRNATarget
AK108595.1
ncRNA:24   AAUU--AUAUACUGCGGCAACUAAAA   1
  *|||--|||||*|||||*||||||||
targets:986   AUAAGCUAUAUAACGCCAUUGAUUUU   1011

2.5 Oryza sativa Japonica Group cDNA clone:002-146-D12, full insert sequence NA coding protein psRNATarget
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