Search result

BaseInfo

ncRNA ID	novel_osa_miR3037
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:30109237-30109438 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040386;SRR2040394;SRR2040396;SRR2040401;SRR2040402;SRR2040403
Length	24
Mature sequence(if miRNA)	179 - AUCCACAUUCGUUGUACUAGAAUA - 202
Stem-loop(if miRNA)	--UC                   GAGAG              ACAA                  A    GUGACC           U               CC     CUAGUACAAUGAAUGUGGA     GUACUCCCUCCGUC    AAAGAAUCAACCUAGGAG GGAU      CCCCUCCUAGG UGAUGUAUGUGGACA  C     |||||||||||||||||||     ||||||||||||||    |||||||||||||||||| ||||      ||||||||||| |||||||||||||||     GAUCAUGUUGCUUACACCU     UAUGAGGGAGGCAG    UUUCUUAGUUGGAUCCUC CCUA      GGGGAGGAUCC GUUACAUACACCUGU  C AUAA                   ----A              GGAA                  -    -GUGUA           U               AC
Stem-loop sequence	UCCUAGUACAAUGAAUGUGGAGAGAGGUACUCCCUCCGUCACAAAAAGAAUCAACCUAGGAGAGGAUGUGACCCCCCUCCUAGGUUGAUGUAUGUGGACACCCCCAUGUCCACAUACAUUGUCCUAGGAGGGGAUGUGAUCCCUCCUAGGUUGAUUCUUUAAGGGACGGAGGGAGUAUAUCCACAUUCGUUGUACUAGAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778607.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||||||||||||||||||*||||* targets:1060   UAUUCUAGUACAACGAAUCUGGAC   1083 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA	anthocyanidin reductase(LOC4337098)	coding protein	psRNATarget
AK062145.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||*|||||||||||||||*||||| targets:162   UAAUCUAGUACAACGAAUAUGGAU   185 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence	NA	coding protein	psRNATarget
AK071898.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   *|||*|||||||||||||*||||| targets:2685   CAUUAUAGUACAACGAAUCUGGAU   2708 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   *|||*|||||||||||||*||||| targets:2701   CAUUAUAGUACAACGAAUCUGGAU   2724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
JB164416.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:34   UAACCUAGUACAACGAAUCUGGAU   57 Target Full Sequence	1.5	Sequence 2080 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236085.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:34   UAACCUAGUACAACGAAUCUGGAU   57 Target Full Sequence	1.5	Sequence 2080 from Patent EP2985353	NA	coding protein	psRNATarget
HI403955.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:34   UAACCUAGUACAACGAAUCUGGAU   57 Target Full Sequence	1.5	Sequence 2080 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015784597.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784596.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784593.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784595.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||**||||||||||||||*||||| targets:2388   UAACCUAGUACAACGAAUCUGGAU   2411 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
AK288796.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   ||--||||||=|||||||*||||| targets:375   UA--CUAGUAUAACGAAUCUGGAU   396 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK111992.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   **|*||||||||||||||*||||* targets:704   CCUCCUAGUACAACGAAUCUGGAC   727 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence	NA	coding protein	psRNATarget
XM_015789120.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   **|*||||||||||||||*||||* targets:1265   CCUCCUAGUACAACGAAUCUGGAC   1288 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
XM_015789119.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   **|*||||||||||||||*||||* targets:1360   CCUCCUAGUACAACGAAUCUGGAC   1383 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
AK102332.1	ncRNA:24   AUAAGAUCAUGUUGCUUACACCUA   1   **|*||||||||||||||*||||* targets:1764   CCUCCUAGUACAACGAAUCUGGAC   1787 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence	NA	coding protein	psRNATarget