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BaseInfo

ncRNA ID	novel_osa_miR3035
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28261056-28261237 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040385;SRR2040391;SRR2040394
Length	24
Mature sequence(if miRNA)	159 - AAACGUUACAAGUAAAAACUCAAA - 182
Stem-loop(if miRNA)	--         -    CAC       A       C     C  UU        C    -------------AUAAAAA   AAAAAGUUAUGCUUAAA   UGAGUUUUU CUUG   CGUUUGA CAUUCGU UUAUU AA  UUUUUUUG AAAU                    AAU                 G   ||||||||| ||||   ||||||| ||||||| ||||| ||  |||||||| ||||                    |||                 U   ACUCAAAAA GAAC   GCAAACU GUGAGCA AAUAA UU  AAAAAAAC UUUA                    UGA                 A AA         U    AUU       G       A     A  UU        -    AUAAUAAAUAAAAUAAACAC   AUGAAAUAAUAGAUAUU
Stem-loop sequence	UGAGUUUUUCUUGCACCGUUUGAACAUUCGUCUUAUUCAAUUUUUUUUUGCAAAUAUAAAAAAAUAAAAAGUUAUGCUUAAAGUAUUAUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAAAUUUUAAAUAAAACGAGUGGUCAAACGUUACAAGUAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064773.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||||||||||=|||||||||||| targets:2905   UUUGAGUUUUUGCUUGUAACGUUU   2928 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK068176.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||||||||||=|||||||||||| targets:1688   UUUGAGUUUUUGCUUGUAACGUUU   1711 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013132G13, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||||||||||=|||||||||||| targets:885   UUUGAGUUUUUGCUUGUAACGUUU   908 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
XM_015780390.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||||||||||=|||||||||||| targets:1643   UUUGAGUUUUUGCUUGUAACGUUU   1666 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetin glucosyltransferase (LOC4336004), mRNA	7-deoxyloganetin glucosyltransferase(LOC4336004)	coding protein	psRNATarget
AK061024.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||||||||||=|||||||||||| targets:1623   UUUGAGUUUUUGCUUGUAACGUUU   1646 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-204-F02, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   ||||||||||||||||*||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   ||||||||||||||||*||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015761216.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|||||||=|||||||||||| targets:1287   UUUAAGUUUUUGCUUGUAACGUUU   1310 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X3, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761224.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|||||||=|||||||||||| targets:1261   UUUAAGUUUUUGCUUGUAACGUUU   1284 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X4, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761204.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|||||||=|||||||||||| targets:1216   UUUAAGUUUUUGCUUGUAACGUUU   1239 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X1, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761210.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|||||||=|||||||||||| targets:1183   UUUAAGUUUUUGCUUGUAACGUUU   1206 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X2, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015779114.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|*||||||=||||||||||| targets:605   UUUAAUUUUUUAUUUGUAACGUUU   628 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
AK107988.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|*||||||=||||||||||| targets:567   UUUAAUUUUUUAUUUGUAACGUUU   590 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
CT831424.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   |||*|*||||||=||||||||||| targets:564   UUUAAUUUUUUAUUUGUAACGUUU   587 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK119275.1	ncRNA:24   AAACUCAAAAAUGAACAUUGCAAA   1   ||||**|||||*|||||||||||| targets:1821   UUUGUCUUUUUUCUUGUAACGUUU   1844 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-130-B07, full insert sequence	NA	coding protein	psRNATarget