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BaseInfo

ncRNA ID novel_osa_miR3032
Species Oryza sativa
Class miRNA
Genome position Chr12:9585799-9585967 [-]
Reference genome IRGSP-1.0
Source SRR2040384;SRR2040410
Length 22
Mature sequence(if miRNA) 148 - UCUGUAUCCAACGUUUGACUGU - 169
Stem-loop(if miRNA) --     A                    UC   A     UUUUUU     -----------UU  UAUUUUCAUUGUUGUUAGAUGAUAAA
  UCUGU UCCAACGUUUGACUGUCCGU  UAU UGAAA      UAUAA             AG                          A
  ||||| ||||||||||||||||||||  ||| |||||      |||||             ||
  AGGCA AGGUUGCAAACUGGCAGGCA  AUA ACUUU      AUAUU             CU                          U
AA     C                    UA   A     --UUUU     UUUUUUAAUUUUU  AUUCAGUGCGUAUUUCAUAAUUAGUA
Stem-loop sequence UCUGUAUCCAACGUUUGACUGUCCGUUCUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUGAUUAAUACUUUAUGCGUGACUUAUCUUUUUAAUUUUUUUUAUAUUUUUUUCAAAUAAUACGGACGGUCAAACGUUGGACACGGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK070410.1
ncRNA:22   UGUCAGUUUGCAACCUAUGUCU   1
  |*||||||||||||||||||||
targets:1109   AGAGUCAAACGUUGGAUACAGA   1130

0.0 Oryza sativa Japonica Group cDNA clone:J023052N01, full insert sequence NA coding protein psRNATarget
XM_015761929.1
ncRNA:22   UGUCAGUUUGCAACCUAUGUCU   1
  ||=|||||||||||||*|||||
targets:27   ACGGUCAAACGUUGGACACAGA   48

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA disease resistance protein RGA2(LOC4350187) coding protein psRNATarget