ncRNA ID | novel_osa_miR3032 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:9585799-9585967 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR2040384;SRR2040410 |
Length | 22 |
Mature sequence(if miRNA) | 148 - UCUGUAUCCAACGUUUGACUGU - 169 |
Stem-loop(if miRNA) |
--     A                    UC   A     UUUUUU     -----------UU  UAUUUUCAUUGUUGUUAGAUGAUAAA   UCUGU UCCAACGUUUGACUGUCCGU  UAU UGAAA      UAUAA             AG                          A   ||||| ||||||||||||||||||||  ||| |||||      |||||             ||   AGGCA AGGUUGCAAACUGGCAGGCA  AUA ACUUU      AUAUU             CU                          U AA     C                    UA   A     --UUUU     UUUUUUAAUUUUU  AUUCAGUGCGUAUUUCAUAAUUAGUA |
Stem-loop sequence | UCUGUAUCCAACGUUUGACUGUCCGUUCUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUGAUUAAUACUUUAUGCGUGACUUAUCUUUUUAAUUUUUUUUAUAUUUUUUUCAAAUAAUACGGACGGUCAAACGUUGGACACGGAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK070410.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:J023052N01, full insert sequence | NA | coding protein | psRNATarget | |||||||||
XM_015761929.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA | disease resistance protein RGA2(LOC4350187) | coding protein | psRNATarget |