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BaseInfo

ncRNA ID	novel_osa_miR3028
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:20734899-20734967 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	25
Mature sequence(if miRNA)	45 - AUAUGUCACAUCCAGUACUAGGUUG - 69
Stem-loop(if miRNA)	--      A  C A           -A   AUAUU   AUCUAG AC G AUGUGGCAUAU  CUA     A   |||||| || | |||||||||||  |||   UGGAUC UG C UACACUGUAUA  GGU     C GU      A  A C           CG   CUAAG
Stem-loop sequence	AUCUAGAACCGAAUGUGGCAUAUACUAAUAUUACGAAUCUGGGCAUAUGUCACAUCCAGUACUAGGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||||||||||||||||||=|||| targets:538   CAACCUAGUACUGGAUGUGAUAUAU   562 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015762655.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =||=||||||||||||||||=|||| targets:3961   UAAUCUAGUACUGGAUGUGAUAUAU   3985 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g22410, mitochondrial (LOC4351834), transcript variant X8, mRNA	pentatricopeptide repeat-containing protein At2g22410, mitochondrial(LOC4351834)	coding protein	psRNATarget
XM_015762648.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =||=||||||||||||||||=|||| targets:3965   UAAUCUAGUACUGGAUGUGAUAUAU   3989 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g22410, mitochondrial (LOC4351834), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At2g22410, mitochondrial(LOC4351834)	coding protein	psRNATarget
XM_015762651.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =||=||||||||||||||||=|||| targets:3992   UAAUCUAGUACUGGAUGUGAUAUAU   4016 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g22410, mitochondrial (LOC4351834), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At2g22410, mitochondrial(LOC4351834)	coding protein	psRNATarget
XM_015762649.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =||=||||||||||||||||=|||| targets:4089   UAAUCUAGUACUGGAUGUGAUAUAU   4113 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g22410, mitochondrial (LOC4351834), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At2g22410, mitochondrial(LOC4351834)	coding protein	psRNATarget
XM_015762650.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =||=||||||||||||||||=|||| targets:4116   UAAUCUAGUACUGGAUGUGAUAUAU   4140 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g22410, mitochondrial (LOC4351834), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At2g22410, mitochondrial(LOC4351834)	coding protein	psRNATarget
XM_015759388.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =|||||||||||||||||||||*|| targets:395   UAACCUAGUACUGGAUGUGACACAU   419 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
XM_015758227.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   |||=|||*||||||||||||=|||| targets:1683   CAAUCUAAUACUGGAUGUGAUAUAU   1707 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X4, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758220.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   |||=|||*||||||||||||=|||| targets:2060   CAAUCUAAUACUGGAUGUGAUAUAU   2084 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X3, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758212.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   |||=|||*||||||||||||=|||| targets:2135   CAAUCUAAUACUGGAUGUGAUAUAU   2159 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X2, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758208.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   |||=|||*||||||||||||=|||| targets:2433   CAAUCUAAUACUGGAUGUGAUAUAU   2457 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X1, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015756503.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||||||*|=*||||||||||||| targets:1678   CAACCUAGAAUAGGAUGUGACAUAU   1702 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group retinol dehydrogenase 13 (LOC4346804), mRNA	retinol dehydrogenase 13(LOC4346804)	coding protein	psRNATarget
XM_015780739.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||=|||*|||||||||||||*|| targets:868   CAACUUAGGACUGGAUGUGACACAU   892 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X3, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780740.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||=|||*|||||||||||||*|| targets:868   CAACUUAGGACUGGAUGUGACACAU   892 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X4, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780738.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||=|||*|||||||||||||*|| targets:868   CAACUUAGGACUGGAUGUGACACAU   892 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X2, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
HI404032.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=|||*|||*||||||||||||| targets:3   GAAUCUAAUACCGGAUGUGACAUAU   27 Target Full Sequence	2.0	Sequence 2157 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236162.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=|||*|||*||||||||||||| targets:3   GAAUCUAAUACCGGAUGUGACAUAU   27 Target Full Sequence	2.0	Sequence 2157 from Patent EP2985353	NA	coding protein	psRNATarget
JB164493.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=|||*|||*||||||||||||| targets:3   GAAUCUAAUACCGGAUGUGACAUAU   27 Target Full Sequence	2.0	Sequence 2157 from Patent EP2559767	NA	coding protein	psRNATarget
JB164656.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=|||*|||*||||||||||||| targets:3   AAAUCUAAUACCGGAUGUGACAUAU   27 Target Full Sequence	2.0	Sequence 2320 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236325.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=|||*|||*||||||||||||| targets:3   AAAUCUAAUACCGGAUGUGACAUAU   27 Target Full Sequence	2.0	Sequence 2320 from Patent EP2985353	NA	coding protein	psRNATarget
HI404195.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=|||*|||*||||||||||||| targets:3   AAAUCUAAUACCGGAUGUGACAUAU   27 Target Full Sequence	2.0	Sequence 2320 from Patent EP2074227	NA	coding protein	psRNATarget
AK111475.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||||**|||*||||||||||||| targets:1275   CAACCUCAUACCGGAUGUGACAUAU   1299 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence	NA	coding protein	psRNATarget
AK119335.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   ||||||**|||*||||||||||||| targets:1105   CAACCUCAUACCGGAUGUGACAUAU   1129 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence	NA	coding protein	psRNATarget
XM_015788811.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   |*|||||||||*|||||||||||*| targets:847   CUACCUAGUACGGGAUGUGACAUUU   871 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277009 (LOC107277009), transcript variant X1, mRNA	uncharacterized LOC107277009(LOC107277009)	coding protein	psRNATarget
AK288761.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =|*==|||||||||||||||||*|| targets:2856   UAUUUUAGUACUGGAUGUGACACAU   2880 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090067C10, full insert sequence	NA	coding protein	psRNATarget
HI403880.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||==|||*|||||||||||||*|| targets:1   GAAUUUAGAACUGGAUGUGACACAU   25 Target Full Sequence	2.5	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
JB164341.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||==|||*|||||||||||||*|| targets:1   GAAUUUAGAACUGGAUGUGACACAU   25 Target Full Sequence	2.5	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236010.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||==|||*|||||||||||||*|| targets:1   GAAUUUAGAACUGGAUGUGACACAU   25 Target Full Sequence	2.5	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015758372.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   =||*|||||||*|||*||||||||| targets:2103   UAAGCUAGUACGGGAAGUGACAUAU   2127 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3 (LOC4347965), mRNA	protein NRT1/ PTR FAMILY 8.3(LOC4347965)	coding protein	psRNATarget
XM_015768711.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=*||||||*||||||||||*|| targets:1386   AAAUAUAGUACCGGAUGUGACACAU   1410 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331223 (LOC4331223), transcript variant X2, mRNA	uncharacterized LOC4331223(LOC4331223)	coding protein	psRNATarget
XM_015768710.1	ncRNA:25   GUUGGAUCAUGACCUACACUGUAUA   1   *||=*||||||*||||||||||*|| targets:1399   AAAUAUAGUACCGGAUGUGACACAU   1423 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331223 (LOC4331223), transcript variant X1, mRNA	uncharacterized LOC4331223(LOC4331223)	coding protein	psRNATarget