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BaseInfo

ncRNA ID	novel_osa_miR3026
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:10290703-10290761 [+]
Reference genome	IRGSP-1.0
Source	SRR2040384;SRR2040392;SRR2040403;SRR1609313;SRR1609314
Length	24
Mature sequence(if miRNA)	36 - AUUCGUAGUACUAGGAUAUGUCCC - 59
Stem-loop(if miRNA)	--                    U    UC   GACAUAUCCUAGUACUAUGA UCUG  C   |||||||||||||||||||| ||||  U   CUGUAUAGGAUCAUGAUGCU AGAU  G CC                    U    CU
Stem-loop sequence	GACAUAUCCUAGUACUAUGAUUCUGUCCUGUCUAGAUUCGUAGUACUAGGAUAUGUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015761638.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||*||||||||||||||||| targets:3903   GGGACACAUCCUAGUACUACGAAU   3926 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK063452.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*|||||||||||||||||=|||| targets:113   GUGACAUAUCCUAGUACUAUGAAU   136 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
HI404175.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||==|||||||||||||||||| targets:22   GAGAUGUAUCCUAGUACUACGAAU   45 Target Full Sequence	1.0	Sequence 2300 from Patent EP2074227	NA	coding protein	psRNATarget
JB164636.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||==|||||||||||||||||| targets:22   GAGAUGUAUCCUAGUACUACGAAU   45 Target Full Sequence	1.0	Sequence 2300 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236305.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||==|||||||||||||||||| targets:22   GAGAUGUAUCCUAGUACUACGAAU   45 Target Full Sequence	1.0	Sequence 2300 from Patent EP2985353	NA	coding protein	psRNATarget
AK107672.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||==|||||||||||||||||| targets:871   GUGAUGUAUCCUAGUACUACGAAU   894 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
AK107495.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*|||||||=|||||||||=|||| targets:924   GAGACAUAUUCUAGUACUAUGAAU   947 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*|||||||=|||||||||=|||| targets:304   GUGACAUAUUCUAGUACUAUGAAU   327 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*|||||||=|||||||||=|||| targets:1072   GUGACAUAUUCUAGUACUAUGAAU   1095 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK287815.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **|||||||=||||||=||||||| targets:1930   AUGACAUAUUCUAGUAUUACGAAU   1953 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065180O15, full insert sequence	NA	coding protein	psRNATarget
JB165013.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||||||||||||||||*||| targets:38   GAGACAUAUCCUAGUACUACAAAU   61 Target Full Sequence	1.5	Sequence 2677 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236682.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||||||||||||||||*||| targets:38   GAGACAUAUCCUAGUACUACAAAU   61 Target Full Sequence	1.5	Sequence 2677 from Patent EP2985353	NA	coding protein	psRNATarget
HI404552.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||||||||||||||||*||| targets:38   GAGACAUAUCCUAGUACUACAAAU   61 Target Full Sequence	1.5	Sequence 2677 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236085.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:28   GGGACAUAACCUAGUACAACGAAU   51 Target Full Sequence	2.5	Sequence 2080 from Patent EP2985353	NA	coding protein	psRNATarget
JB164416.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:28   GGGACAUAACCUAGUACAACGAAU   51 Target Full Sequence	2.5	Sequence 2080 from Patent EP2559767	NA	coding protein	psRNATarget
HI403955.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:28   GGGACAUAACCUAGUACAACGAAU   51 Target Full Sequence	2.5	Sequence 2080 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015775668.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*|||||*|||||||||||||||| targets:1579   GUGACAUUUCCUAGUACUACGAAU   1602 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group RNA pseudouridine synthase 5 (LOC4332490), mRNA	RNA pseudouridine synthase 5(LOC4332490)	coding protein	psRNATarget
AK106283.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||*|||||||||*||||||| targets:3141   GGGACACAUCCUAGUAAUACGAAU   3164 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-101-A05, full insert sequence	NA	coding protein	psRNATarget
XM_015784597.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:2382   GGGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784596.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:2382   GGGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784593.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:2382   GGGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784595.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ||||||||*||||||||*|||||| targets:2382   GGGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015778607.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*|||||||=|||||||*|||||| targets:1054   GUGACAUAUUCUAGUACAACGAAU   1077 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA	anthocyanidin reductase(LOC4337098)	coding protein	psRNATarget
XM_015770952.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||||||=|||*||||||||| targets:1330   GUGACAUAUCUUAGAACUACGAAU   1353 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C (LOC4330019), mRNA	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C(LOC4330019)	coding protein	psRNATarget
XM_015759388.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||*|||||=||||||||||| targets:411   GUGACACAUCCUGGUACUACGAAU   434 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288631.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||*||=|||||||||||||| targets:4117   GUGACACAUUCUAGUACUACGAAU   4140 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
CT829763.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **|||||||=|||*|||||||||| targets:967   AUGACAUAUUCUAAUACUACGAAU   990 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence	NA	coding protein	psRNATarget
AK066512.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **|||||||=|||*|||||||||| targets:970   AUGACAUAUUCUAAUACUACGAAU   993 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068C19, full insert sequence	NA	coding protein	psRNATarget
AK100958.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **||||||||=*|||||||||||| targets:1295   AAGACAUAUCUCAGUACUACGAAU   1318 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023140K23, full insert sequence	NA	coding protein	psRNATarget
XM_015782951.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **||||||||=*|||||||||||| targets:1310   AAGACAUAUCUCAGUACUACGAAU   1333 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g71691 (LOC4338820), mRNA	GDSL esterase/lipase At1g71691(LOC4338820)	coding protein	psRNATarget
LQ235962.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=|*||=|||||||||||||| targets:3   GUGAUACAUUCUAGUACUACGAAU   26 Target Full Sequence	2.0	Sequence 1957 from Patent EP2985353	NA	coding protein	psRNATarget
HI403832.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=|*||=|||||||||||||| targets:3   GUGAUACAUUCUAGUACUACGAAU   26 Target Full Sequence	2.0	Sequence 1957 from Patent EP2074227	NA	coding protein	psRNATarget
JB164293.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=|*||=|||||||||||||| targets:3   GUGAUACAUUCUAGUACUACGAAU   26 Target Full Sequence	2.0	Sequence 1957 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015758227.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=||||=|||*|||||||||| targets:1699   GUGAUAUAUUCUAAUACUACGAAU   1722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X4, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
HI404240.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **||==||||*||||||||||||| targets:30   CUGAUGUAUCAUAGUACUACGAAU   53 Target Full Sequence	2.0	Sequence 2365 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236370.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **||==||||*||||||||||||| targets:30   CUGAUGUAUCAUAGUACUACGAAU   53 Target Full Sequence	2.0	Sequence 2365 from Patent EP2985353	NA	coding protein	psRNATarget
JB164701.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   **||==||||*||||||||||||| targets:30   CUGAUGUAUCAUAGUACUACGAAU   53 Target Full Sequence	2.0	Sequence 2365 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015758220.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=||||=|||*|||||||||| targets:2076   GUGAUAUAUUCUAAUACUACGAAU   2099 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X3, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758212.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=||||=|||*|||||||||| targets:2151   GUGAUAUAUUCUAAUACUACGAAU   2174 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X2, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758208.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=||||=|||*|||||||||| targets:2449   GUGAUAUAUUCUAAUACUACGAAU   2472 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X1, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
AK288796.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||=||||*=||||||||||||| targets:554   GUGAUAUAUGUUAGUACUACGAAU   577 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK063369.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||*|||||||||||||*||| targets:980   GUGACACAUCCUAGUACUACAAAU   1003 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||*|||||||||||||*||| targets:1091   GUGACACAUCCUAGUACUACAAAU   1114 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
XM_015793611.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   |*||||*|||||||*||||||||| targets:2537   GCGACACAUCCUAGCACUACGAAU   2560 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 5 (LOC9270038), mRNA	wall-associated receptor kinase 5(LOC9270038)	coding protein	psRNATarget
AK061182.1	ncRNA:24   CCCUGUAUAGGAUCAUGAUGCUUA   1   ***|=||||=||||||||||*||| targets:835   CACAUAUAUUCUAGUACUACAAAU   858 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-209-D09, full insert sequence	NA	coding protein	psRNATarget
AK289010.1	ncRNA:24   CC---CUGUAUAGGAUCAUGAUGCUUA   1   ||---|==||||*||||||||*||||| targets:4357   GGUAAGGUAUAUACUAGUACUUCGAAU   4383 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089F21, full insert sequence	NA	coding protein	psRNATarget