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BaseInfo

ncRNA ID novel_osa_miR3022
Species Oryza sativa
Class miRNA
Genome position Chr7:19731476-19731591 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1555749;SRR2097778;SRR2098557;SRR2098560;SRR1555751;SRR2099745;SRR4407956;SRR1556016;SRR4407961;SRR1556018;SRR1298766;SRR1556020
Length 24
Mature sequence(if miRNA) 93 - AACUUGUAGAAGUUGAAUUUGGUC - 116
Stem-loop(if miRNA) --      -               A        A   A    AU     C    -  AU
  UUAAAU UAACUUCUAUAAGUU UAAUAAAA UAA AAAU  AGCUG AAAU GU  G
  |||||| ||||||||||||||| |||||||| ||| ||||  ||||| |||| ||
  GGUUUA GUUGAAGAUGUUCAA GUUGUUUU AUU UUUA  UUGAU UUUA CA  A
CU      A               C        C   A    AU     U    U  AU
Stem-loop sequence UUAAAUUAACUUCUAUAAGUUAUAAUAAAAAUAAAAAAUAUAGCUGCAAAUGUAUGAUAACUAUUUUUAGUUUAAUUUAUUACUUUUGUUGCAACUUGUAGAAGUUGAAUUUGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241681.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  ||=|||||||||||||||=|||||
targets:1007   GAUCAAAUUCAACUUCUAUAAGUU   1030

1.5 Oryza sativa Japonica Group cDNA, clone: J065193N01, full insert sequence NA coding protein psRNATarget
JB164012.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||||||||=|||||
targets:101   GGUCAAAUUUAACUUCUAUAAGUU   124

2.5 Sequence 1676 from Patent EP2559767 NA coding protein psRNATarget
HI403551.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||||||||=|||||
targets:101   GGUCAAAUUUAACUUCUAUAAGUU   124

2.5 Sequence 1676 from Patent EP2074227 NA coding protein psRNATarget
LQ235681.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||||||||=|||||
targets:101   GGUCAAAUUUAACUUCUAUAAGUU   124

2.5 Sequence 1676 from Patent EP2985353 NA coding protein psRNATarget
AK067102.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||||||||=|||||
targets:472   GGUCAAAUUUAACUUCUAUAAGUU   495

2.5 Oryza sativa Japonica Group cDNA clone:J013095D16, full insert sequence NA coding protein psRNATarget
AK288928.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=||||||||=||||||||||||
targets:4310   GUUCAAAUUCAGCUUCUACAAGUU   4333

1.5 Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence NA coding protein psRNATarget
XM_015771705.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:3460   GGUCAAAUUUAAAUUCUACAAGUU   3483

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X14, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771704.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:3479   GGUCAAAUUUAAAUUCUACAAGUU   3502

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X13, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771701.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:3563   GGUCAAAUUUAAAUUCUACAAGUU   3586

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X11, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771702.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:3825   GGUCAAAUUUAAAUUCUACAAGUU   3848

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X12, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771698.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4526   GGUCAAAUUUAAAUUCUACAAGUU   4549

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X8, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771696.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4578   GGUCAAAUUUAAAUUCUACAAGUU   4601

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X6, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771692.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4629   GGUCAAAUUUAAAUUCUACAAGUU   4652

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X2, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771700.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4643   GGUCAAAUUUAAAUUCUACAAGUU   4666

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X10, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771699.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4662   GGUCAAAUUUAAAUUCUACAAGUU   4685

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X9, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771694.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4681   GGUCAAAUUUAAAUUCUACAAGUU   4704

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X4, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771695.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:4872   GGUCAAAUUUAAAUUCUACAAGUU   4895

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X5, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771697.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:5007   GGUCAAAUUUAAAUUCUACAAGUU   5030

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X7, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771691.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:5129   GGUCAAAUUUAAAUUCUACAAGUU   5152

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X1, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771693.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |==||||||=||*|||||||||||
targets:5261   GGUCAAAUUUAAAUUCUACAAGUU   5284

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X3, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015768551.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  **==|||||=||=|||||||||||
targets:1454   AUUUAAAUUUAAUUUCUACAAGUU   1477

2.5 PREDICTED: Oryza sativa Japonica Group syntaxin-124 (LOC9272269), mRNA syntaxin-124(LOC9272269) coding protein psRNATarget
AK070412.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=*|||||||=||||||||||||
targets:108   GUUAAAAUUCAGCUUCUACAAGUU   131

1.5 Oryza sativa Japonica Group cDNA clone:J023054E23, full insert sequence NA coding protein psRNATarget
XM_015774413.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  *==||||||=||||||*|||||||
targets:1648   UGUCAAAUUUAACUUCAACAAGUU   1671

2.5 PREDICTED: Oryza sativa Japonica Group hydroquinone glucosyltransferase (LOC4326623), mRNA hydroquinone glucosyltransferase(LOC4326623) coding protein psRNATarget
AK288287.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=*|||||||||||=||||||||
targets:4320   GUUAAAAUUCAACUUUUACAAGUU   4343

1.5 Oryza sativa Japonica Group cDNA, clone: J090018F21, full insert sequence NA coding protein psRNATarget
AK241705.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  **=||||||||||||*|||||||*
targets:3008   AUUCAAAUUCAACUUAUACAAGUA   3031

2.5 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget
HI404317.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=*|||||*||||||||||||||
targets:107   GUUAAAAUUAAACUUCUACAAGUU   130

1.0 Sequence 2442 from Patent EP2074227 NA coding protein psRNATarget
LQ236447.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=*|||||*||||||||||||||
targets:107   GUUAAAAUUAAACUUCUACAAGUU   130

1.0 Sequence 2442 from Patent EP2985353 NA coding protein psRNATarget
JB164778.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=*|||||*||||||||||||||
targets:107   GUUAAAAUUAAACUUCUACAAGUU   130

1.0 Sequence 2442 from Patent EP2559767 NA coding protein psRNATarget
XM_015781215.1
ncRNA:24   CUGGUUUAAGUUGAAGAUGUUCAA   1
  |*=*|||||||||||||||||*||
targets:830   GUUAAAAUUCAACUUCUACAAAUU   853

1.5 PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA putative beta-glucosidase 15(LOC107280799) coding protein psRNATarget
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