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BaseInfo

ncRNA ID	novel_osa_miR3013
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:14358603-14358762 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040393
Length	21
Mature sequence(if miRNA)	1 - CUAAUUACACAGAUGGAGGCU - 21
Stem-loop(if miRNA)	--  A    C   G              U  A            CA   -                 U -    -UA        CU AUUA ACA AUGGAGGCUAAUUU GC AGAUGAAUCUAU  AGC CUAAUUAGUCUAUGAUU G AUAU   UAGUGC   || |||| ||| |||||||||||||| || ||||||||||||  ||| ||||||||||||||||| | ||||   |||||U   GA UAAU UGU UAUCUCCGAUUAAA CG UCUGCUUAGAUA  UUG GAUUAAUUAGGUACUAA C UGUG   AUCACA UU  A    A   A              -  C            -A   A                 U G    UAA
Stem-loop sequence	CUAAUUACACAGAUGGAGGCUAAUUUUGCAAGAUGAAUCUAUCAAGCCUAAUUAGUCUAUGAUUUGAUAUUAUAGUGCUACACUAAAUGUGUGCUAAUCAUGGAUUAAUUAGAGUUAAUAGAUUCGUCUCGCAAAUUAGCCUCUAUAUGUAUAAUAAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064965.1	ncRNA:21   UCGGAGGUAGACACAUUAAUC   1   ||||||=|||||||||||||| targets:1253   AGCCUCUAUCUGUGUAAUUAG   1273 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013001B01, full insert sequence	NA	coding protein	psRNATarget
XM_015778734.1	ncRNA:21   UCGGAGGUAGACACAUUAAUC   1   ||||||=|||||||||||||| targets:1252   AGCCUCUAUCUGUGUAAUUAG   1272 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1 (LOC4334949), transcript variant X1, mRNA	very-long-chain 3-oxoacyl-CoA reductase 1(LOC4334949)	coding protein	psRNATarget
AK102033.1	ncRNA:21   UCGGAGGUAGACACAUUAAUC   1   ||||||||||*|||||||||| targets:450   AGCCUCCAUCCGUGUAAUUAG   470 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK289029.1	ncRNA:21   UCGGAGGUAGACACAUUAAUC   1   ||=|*|||||||||||||||| targets:2246   AGUCCCCAUCUGUGUAAUUAG   2266 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget