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BaseInfo

ncRNA ID novel_osa_miR3007
Species Oryza sativa
Class miRNA
Genome position Chr8:14265682-14265799 [-]
Reference genome IRGSP-1.0
Source SRR2040383
Length 24
Mature sequence(if miRNA) 95 - CUUAAUAGAUUCAUGUCGUAGUUU - 118
Stem-loop(if miRNA) --              G            GA A                AUUAAACGUA
  CUUAAUAGAUUCAU UCGUAGUUUACA  C GAAUCUGUAAUUUGUU          G
  |||||||||||||| ||||||||||||  | ||||||||||||||||
  GAAUUAUCUAAGUA AGCAUCAAAUGU  G CUUAGAUAUUAAACAA          A
CC              G            UC C                AACAAUAAUC
Stem-loop sequence CUUAAUAGAUUCAUGUCGUAGUUUACAGACAGAAUCUGUAAUUUGUUAUUAAACGUAGACUAAUAACAAAACAAAUUAUAGAUUCCGCUUGUAAACUACGAGAUGAAUCUAUUAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK102033.1
ncRNA:24   UUUGAUGCUGUACUUAGAUAAUUC   1
  ||*=|||||*||||||||||||||
targets:342   AAUUUACGAGAUGAAUCUAUUAAG   365

1.0 Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence NA coding protein psRNATarget
AK288192.1
ncRNA:24   UUUGAUGCUGUACUUAGAUAAUUC   1
  |||=|||||*||||||||*|||||
targets:1844   AAAUUACGAGAUGAAUCUUUUAAG   1867

2.5 Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence NA coding protein psRNATarget
AK072891.1
ncRNA:24   UUUGAUGCUGUACUUAGAUAAUUC   1
  |||=*||||*||||||||*|||||
targets:866   AAAUCACGAGAUGAAUCUUUUAAG   889

2.5 Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence NA coding protein psRNATarget