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BaseInfo

ncRNA ID	novel_osa_miR3006
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:18082264-18082462 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040393;SRR2040397
Length	21
Mature sequence(if miRNA)	1 - UAUGACGCUGUUGACUUUUUU - 21
Stem-loop(if miRNA)	--                    UUU              C  AUC     A    -AAUCA     -UUUUCAUU     -UA     G     UUC  UAU   UAUGACGCUGUUGACUUUUU   UUAACGUUUGACCA UC   UUAUU AAAA      UGUAA         UAUUU   UUAUG CUUGA   GC   C   ||||||||||||||||||||   |||||||||||||| ||   ||||| ||||      |||||         |||||   ||||| |||||   ||   AUACUGUGGUAACUGAAAAG   AGUUGCAAACUGGU AG   AAUAA UUUU      ACGUU         AUAAA   AGUAC GAAUU   UG   A CC                    -CU              A  CAA     A    AAAAUC     UAUACUUUU     UAC     -     UCU  UAA
Stem-loop sequence	UAUGACGCUGUUGACUUUUUUUUUUAACGUUUGACCACUCAUCUUAUUAAAAAAAUCAUGUAAUUUUCAUUUAUUUUAUUAUGGCUUGAUUCGCUAUCAAAUGUUCUUUAAGCAUGACAUAAAUAUUUUCAUAUUUGCACUAAAAUUUUAAAUAAAACGAAUGGUCAAACGUUGAUCGAAAAGUCAAUGGUGUCAUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065779.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||| targets:988   GAAAAAGUCAACGGCGUCAUA   1008 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013039E23, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   |||=||||||||=|||||||| targets:1558   AAAGAAGUCAACGGCGUCAUA   1578 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:853   UAAAAAGUCAACGGCGUCAUA   873 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
CT835080.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:1148   CAAAAAGUCAACGGCGUCAUA   1168 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
XM_015777115.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||||||||||* targets:5   GAAAAAGUCAACAGCGUCAUC   25 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331961 (LOC4331961), mRNA	uncharacterized LOC4331961(LOC4331961)	coding protein	psRNATarget
XM_015788430.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||=|||||||||||| targets:1497   UAAAAAGUUAACAGCGUCAUA   1517 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||=|||||||||||| targets:1639   UAAAAAGUUAACAGCGUCAUA   1659 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK066336.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:1789   UAAAAAGUCAACGGCGUCAUA   1809 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence	NA	coding protein	psRNATarget
XM_015756907.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:1781   UAAAAAGUCAACGGCGUCAUA   1801 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA	probable inactive beta-glucosidase 33(LOC4347547)	coding protein	psRNATarget
XM_015781390.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:1458   CAAAAAGUCAACGGCGUCAUA   1478 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:1458   CAAAAAGUCAACGGCGUCAUA   1478 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288474.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:1178   UAAAAAGUCAACGGCGUCAUA   1198 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090038A02, full insert sequence	NA	coding protein	psRNATarget
AK288773.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||||||||||* targets:3907   GAAAAAGUCAACAGCGUCAUC   3927 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090068D07, full insert sequence	NA	coding protein	psRNATarget
AK288703.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:3221   CAAAAAGUCAACGGCGUCAUA   3241 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
AK288628.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||| targets:5207   UAAAAAGUCAACGGCGUCAUA   5227 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence	NA	coding protein	psRNATarget
CT832797.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:780   GAAAAAGUCAACGGCGUCAUC   800 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N07, full insert sequence	NA	coding protein	psRNATarget
XM_015792366.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *=||||||||||=|||||||| targets:860   CGAAAAGUCAACGGCGUCAUA   880 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *=||||||||||=|||||||| targets:868   CGAAAAGUCAACGGCGUCAUA   888 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK068336.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:1061   GAAAAAGUCAACGGCGUCAUC   1081 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013149H05, full insert sequence	NA	coding protein	psRNATarget
XM_015795035.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:1236   GAAAAAGUCAACGGCGUCAUC   1256 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 10 (LOC4325933), transcript variant X1, mRNA	calcineurin B-like protein 10(LOC4325933)	coding protein	psRNATarget
AK105698.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *=||||||||||=|||||||| targets:1274   CGAAAAGUCAACGGCGUCAUA   1294 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
XM_015766756.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:2001   GAAAAAGUCAACGGCGUCAUC   2021 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glucuronosyltransferase Os01g0926600 (LOC4327242), mRNA	probable glucuronosyltransferase Os01g0926600(LOC4327242)	coding protein	psRNATarget
AK288827.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:1413   GAAAAAGUCAACGGCGUCAUC   1433 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073J08, full insert sequence	NA	coding protein	psRNATarget
AK289053.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:785   GAAAAAGUCAACGGCGUCAUC   805 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092P21, full insert sequence	NA	coding protein	psRNATarget
AK288309.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:1053   GAAAAAGUCAACGGCGUCAUC   1073 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence	NA	coding protein	psRNATarget
XM_015762743.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   =|||||||||||=|||||||* targets:58   GAAAAAGUCAACGGCGUCAUC   78 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 1 (LOC107276851), mRNA	putative disease resistance RPP13-like protein 1(LOC107276851)	coding protein	psRNATarget
XM_015792994.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   |||||||*||||=|||||||| targets:2019   AAAAAAGCCAACGGCGUCAUA   2039 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget
AK100009.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||* targets:815   CAAAAAGUCAACGGCGUCAUC   835 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
XM_015786574.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   **||||||||||=|||||||| targets:1654   UUAAAAGUCAACGGCGUCAUA   1674 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AAA-ATPase At3g50940 (LOC4341947), mRNA	AAA-ATPase At3g50940(LOC4341947)	coding protein	psRNATarget
AK064773.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||||||||||=|||||||* targets:2835   CAAAAAGUCAACGGCGUCAUC   2855 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK110581.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *||||||||||||||||||*| targets:650   UAAAAAGUCAACAGCGUCAAA   670 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-168-E09, full insert sequence	NA	coding protein	psRNATarget
AK241507.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   **||||||||||||||||||* targets:1726   UCAAAAGUCAACAGCGUCAUC   1746 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065168E20, full insert sequence	NA	coding protein	psRNATarget
XM_015763290.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   *|||*|||||||=|||||||| targets:1288   CAAACAGUCAACGGCGUCAUA   1308 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein YnbD-like (LOC107279577), transcript variant X3, mRNA	uncharacterized protein YnbD-like(LOC107279577)	coding protein	psRNATarget
XM_015783460.1	ncRNA:21   UUUUUUCAGUUGUCGCAGUAU   1   ||||||*||||||||||||*| targets:901   AAAAAAAUCAACAGCGUCAAA   921 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278662 (LOC107278662), mRNA	uncharacterized LOC107278662(LOC107278662)	coding protein	psRNATarget