Search result

BaseInfo

ncRNA ID	novel_osa_miR3000
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:24733052-24733156 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2857732
Length	24
Mature sequence(if miRNA)	82 - UUGCGAGAUGUAGAAGUUAAAUUU - 105
Stem-loop(if miRNA)	--AUUC                     A     AUUAACUG     A   -   A       AACUUCUACAUCUCGCAACGA AAAAA        UGAAU UAC GUU A       ||||||||||||||||||||| |||||        ||||| ||| |||       UUGAAGAUGUAGAGCGUUGCU UUUUU        GUUUG AUG CAA C UUUAAA                     C     ---GUUUA     -   U   U
Stem-loop sequence	AUUCAACUUCUACAUCUCGCAACGAAAAAAAAUUAACUGUGAAUAUACGUUAACUAACUGUAGUUUGAUUUGUUUUUCUCGUUGCGAGAUGUAGAAGUUAAAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792915.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||||||||||||||||||||| targets:1888   AAAUUUAACUUCUACAUCUCGCAA   1911 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
HI404353.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||*||||||||=||||||||| targets:31   AAAUUCAACUUCUAUAUCUCGCAA   54 Target Full Sequence	2.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||*||||||||=||||||||| targets:31   AAAUUCAACUUCUAUAUCUCGCAA   54 Target Full Sequence	2.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||*||||||||=||||||||| targets:31   AAAUUCAACUUCUAUAUCUCGCAA   54 Target Full Sequence	2.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
JB164690.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||*||||||||||||||*||| targets:31   AAAUUCAACUUCUACAUCUCACAA   54 Target Full Sequence	2.5	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
HI404229.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||*||||||||||||||*||| targets:31   AAAUUCAACUUCUACAUCUCACAA   54 Target Full Sequence	2.5	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:24   UUUAAAUUGAAGAUGUAGAGCGUU   1   |||||*||||||||||||||*||| targets:31   AAAUUCAACUUCUACAUCUCACAA   54 Target Full Sequence	2.5	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget