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BaseInfo

ncRNA ID	novel_osa_miR2999
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:18955934-18956076 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383
Length	24
Mature sequence(if miRNA)	120 - CACCAAAUCUCAACUCCAAACUCA - 143
Stem-loop(if miRNA)	--C         C  C        C          AAG    AAAAA                 U        UC    ACCAAAUCU AA UCCAAACU AAUUUUGUUU   AGGA     AAGAGACAAAUUUUGGG GAAUAGUG  A    ||||||||| || |||||||| ||||||||||   ||||     ||||||||||||||||| ||||||||    UGGUUUAGA UU AGGUUUGA UUAAAAUAAA   UCCU     UUUUCUGUUUAAAAUCC CUUAUCAU  U UAA         A  C        A          ---    ----G                 U        UA
Stem-loop sequence	CACCAAAUCUCAACUCCAAACUCAAUUUUGUUUAAGAGGAAAAAAAAGAGACAAAUUUUGGGUGAAUAGUGUCAUAUUACUAUUCUCCUAAAAUUUGUCUUUUGUCCUAAAUAAAAUUAAGUUUGGACUUAAGAUUUGGUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK102570.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||| targets:24   UGAGUUUGGAUUUGAGAUUUGGUG   47 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033097L21, full insert sequence	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||* targets:123   UGAGUUUGGACUUGAGAUUUGGUA   146 Target Full Sequence	2.0	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
HI403798.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||* targets:123   UGAGUUUGGACUUGAGAUUUGGUA   146 Target Full Sequence	2.0	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
JB164259.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||* targets:123   UGAGUUUGGACUUGAGAUUUGGUA   146 Target Full Sequence	2.0	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
JB164086.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||* targets:150   UGAGUUUGGACUUGAGAUUUGGUA   173 Target Full Sequence	2.0	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||* targets:150   UGAGUUUGGACUUGAGAUUUGGUA   173 Target Full Sequence	2.0	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
HI403625.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||||||||||*||||||||||||* targets:150   UGAGUUUGGACUUGAGAUUUGGUA   173 Target Full Sequence	2.0	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015793144.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||=|||||*|*||||||||||||| targets:1256   UGGGUUUGAACUUGAGAUUUGGUG   1279 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic (LOC4345581), mRNA	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic(LOC4345581)	coding protein	psRNATarget
AK287885.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||=|||||*|*||||||||||||| targets:1213   UGGGUUUGAACUUGAGAUUUGGUG   1236 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065207M01, full insert sequence	NA	coding protein	psRNATarget
CT829929.1	ncRNA:24   ACUCAAACCUCAACUCUAAACCAC   1   ||=*||||*|*||||||||||||| targets:1269   UGGAUUUGAACUUGAGAUUUGGUG   1292 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119P11, full insert sequence	NA	coding protein	psRNATarget