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BaseInfo

ncRNA ID	novel_osa_miR2997
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:8689347-8689414 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2097779;SRR2098557;SRR2098560;SRR1555751;SRR2099428;SRR2099567;SRR2099568;SRR1556011;SRR4407777;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR1556016;SRR4407958;SRR4407960;SRR4407961;SRR4407962;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - UACCAACCGGGACUAAAGAUGGCU - 24
Stem-loop(if miRNA)	--                              GC   UACCAACCGGGACUAAAGAUGGCUCAGCCG  C   ||||||||||||||||||||||||||||||   AUGGUUGGCCCUGAUUUCUACCGAGUCGGU  A CA                              GC
Stem-loop sequence	UACCAACCGGGACUAAAGAUGGCUCAGCCGGCCACGUGGCUGAGCCAUCUUUAGUCCCGGUUGGUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288377.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |||*|||||||||||||||||||= targets:1373   AGCGAUCUUUAGUCCCGGUUGGUG   1396 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCGG----UAGAAAUCAGGGCCAACCAU   1   =|||----|||||||||||||||||||| targets:1693   GGCCGAGGAUCUUUAGUCCCGGUUGGUA   1720 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*==|||||||||||||||||||| targets:1371   AAUUAUCUUUAGUCCCGGUUGGUA   1394 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCGG----UAGAAAUCAGGGCCAACCAU   1   =|||----|||||||||||||||||||= targets:548   GGCCGAGGAUCUUUAGUCCCGGUUGGUG   575 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **|=*|||||||||=||||||||| targets:597   UCCUCUCUUUAGUCUCGGUUGGUA   620 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   ||--|||||||||||||||||||| targets:237   AG--AUCUUUAGUCCCGGUUGGUA   258 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   ||--|||||||||||||||||||= targets:146   AG--AUCUUUAGUCCCGGUUGGUG   167 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCGG-UAGAAAUCAGGGCCAACCAU   1   *|=|-|||||||*|||||||||||* targets:100   CGUCGAUCUUUACUCCCGGUUGGUU   124 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*||||||||||*||||||||||| targets:1366   AUCCAUCUUUAGCCCCGGUUGGUA   1389 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*=*||||||||||||||||*||= targets:2378   AAUGAUCUUUAGUCCCGGUUAGUG   2401 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCG--G-UAGAAAUCAGGGCCAACCAU   1   ||=--|-|||||||||||||||||||| targets:1902   AGUGACGAUCUUUAGUCCCGGUUGGUA   1928 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   =***=*|||||||||||||||||| targets:940   GUGGGACUUUAGUCCCGGUUGGUA   963 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   UCGG----UAGAAAUCAGGGCCAACCAU   1   =|||----|||||||||||=|||||||= targets:300   GGCCGAGGAUCUUUAGUCCUGGUUGGUG   327 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*|||||||||||||||||||| targets:926   UUUAAUCUUUAGUCCCGGUUGGUA   949 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*=*|||||||||||||||||||| targets:140   AAUGAUCUUUAGUCCCGGUUGGUA   163 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK065811.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   ****|||||||||||||||||||| targets:1902   CUAAAUCUUUAGUCCCGGUUGGUA   1925 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   UC-GG-UAGAAAUCAGGGCCAACCAU   1   ||-=|-|||||||||||||||||||= targets:1825   AGAUCGAUCUUUAGUCCCGGUUGGUG   1850 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   ****|||||||||||||||||||| targets:2360   CUAAAUCUUUAGUCCCGGUUGGUA   2383 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*||||||||*||||||||||| targets:1308   UUUGAUCUUUAGCCCCGGUUGGUA   1331 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   *|*=|||||||||||||||||*|* targets:1419   UGGUAUCUUUAGUCCCGGUUGUUU   1442 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*|||||||||||||||||||| targets:44   UUUGAUCUUUAGUCCCGGUUGGUA   67 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK121472.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*|*|||||||||=|||||||||| targets:2057   AUCGAUCUUUAGUUCCGGUUGGUA   2080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:24   UCGG----UAGAAAUCAGGGCCAACCAU   1   ||||----|||||||||||||||||*|= targets:1782   AGCCCUAGAUCUUUAGUCCCGGUUGAUG   1809 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   ||*=|||||||||||||||||*|= targets:2235   AGAUAUCUUUAGUCCCGGUUGUUG   2258 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
HI403921.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **==||||||||||||||||||*| targets:46   UUUUAUCUUUAGUCCCGGUUGGGA   69 Target Full Sequence	1.5	Sequence 2046 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236051.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **==||||||||||||||||||*| targets:46   UUUUAUCUUUAGUCCCGGUUGGGA   69 Target Full Sequence	1.5	Sequence 2046 from Patent EP2985353	NA	coding protein	psRNATarget
JB164382.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **==||||||||||||||||||*| targets:46   UUUUAUCUUUAGUCCCGGUUGGGA   69 Target Full Sequence	1.5	Sequence 2046 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015758676.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   =***||||||=||||||||||||= targets:2020   GAAAAUCUUUGGUCCCGGUUGGUG   2043 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget
HI404518.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   =|=*||||||||*||||||||||= targets:40   GGUGAUCUUUAGCCCCGGUUGGUG   63 Target Full Sequence	2.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
JB164979.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   =|=*||||||||*||||||||||= targets:40   GGUGAUCUUUAGCCCCGGUUGGUG   63 Target Full Sequence	2.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   =|=*||||||||*||||||||||= targets:40   GGUGAUCUUUAGCCCCGGUUGGUG   63 Target Full Sequence	2.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
AK066662.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |**=||||||||||||||||*||| targets:652   AUGUAUCUUUAGUCCCGGUUCGUA   675 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK099726.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |**=|||||||||*|||||||||| targets:1089   AUAUAUCUUUAGUACCGGUUGGUA   1112 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCGG------------UAGAAAUCAGGGCCAACCAU   1   ||||------------|||||||||||||||||*|| targets:1245   AGCCCCCCCCCCUCGGAUCUUUAGUCCCGGUUGAUA   1280 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |***|***|||||||||||||||| targets:1840   AAAAAAACUUAGUCCCGGUUGGUA   1863 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
HI404521.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*=*|||||||||||||*|||||| targets:120   AAUGAUCUUUAGUCCCGAUUGGUA   143 Target Full Sequence	1.5	Sequence 2646 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236651.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*=*|||||||||||||*|||||| targets:120   AAUGAUCUUUAGUCCCGAUUGGUA   143 Target Full Sequence	1.5	Sequence 2646 from Patent EP2985353	NA	coding protein	psRNATarget
JB164982.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   |*=*|||||||||||||*|||||| targets:120   AAUGAUCUUUAGUCCCGAUUGGUA   143 Target Full Sequence	1.5	Sequence 2646 from Patent EP2559767	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*||||||||||||||||*||= targets:39   CAUGAUCUUUAGUCCCGGUUAGUG   62 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*||||||||||||||||*||= targets:39   CAUGAUCUUUAGUCCCGGUUAGUG   62 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*||||||||||||||||*||= targets:39   CAUGAUCUUUAGUCCCGGUUAGUG   62 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   =***|||||||||||||||||*|= targets:67   GAGGAUCUUUAGUCCCGGUUGAUG   90 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288191.1	ncRNA:24   UCGGUAGAAAUCAGGGCCAACCAU   1   **=*|||||||||||||||||*|* targets:1559   UUUGAUCUUUAGUCCCGGUUGUUU   1582 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget