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BaseInfo

ncRNA ID	novel_osa_miR2993
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:984037-984146 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2098557;SRR2458631;SRR1556020
Length	23
Mature sequence(if miRNA)	88 - AUAGAAAAUGCUAGAAUGACUUA - 110
Stem-loop(if miRNA)	--                  CACA                        AACAUAU   AGUCAUUCUAGCAUUUUC    UUCAUAUUGAUGUUAAUGAAUCUA       A   ||||||||||||||||||    ||||||||||||||||||||||||   UCAGUAAGAUCGUAAAAG    AAGUAUAAUUACGAUUACUUAGAU       A AU                  AUAC                        CUAUCUA
Stem-loop sequence	AGUCAUUCUAGCAUUUUCCACAUUCAUAUUGAUGUUAAUGAAUCUAAACAUAUAAAUCUAUCUAGAUUCAUUAGCAUUAAUAUGAACAUAGAAAAUGCUAGAAUGACUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763560.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   |||||||||||||||||||=||| targets:982   UAAGUCAUUCUAGCAUUUUUUAU   1004 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA	uncharacterized LOC107278415(LOC107278415)	coding protein	psRNATarget
AK072906.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||||* targets:2719   UAAGUCAUUCUAGCAUUUUCUAC   2741 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence	NA	coding protein	psRNATarget
AK110888.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||||* targets:1199   UAAGUCAUUCUAGCAUUUUCUAG   1221 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-172-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015777143.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||*|||||||||| targets:1903   UAAGUCAUUCUAUCAUUUUCUAU   1925 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA	lecithin-cholesterol acyltransferase-like 1(LOC4333995)	coding protein	psRNATarget
AK071679.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||*|||||||||| targets:1787   UAAGUCAUUCUAUCAUUUUCUAU   1809 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence	NA	coding protein	psRNATarget
AK241705.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   |||||||||=||||||||*|||| targets:3978   UAAGUCAUUUUAGCAUUUCCUAU   4000 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
XM_015763160.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||*||=||||||||||||||||| targets:1106   UAUGUUAUUCUAGCAUUUUCUAU   1128 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group acidic endochitinase (LOC4325066), mRNA	acidic endochitinase(LOC4325066)	coding protein	psRNATarget
AK111415.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||*||=||||||||||||||||| targets:1101   UAUGUUAUUCUAGCAUUUUCUAU   1123 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-182-G02, full insert sequence	NA	coding protein	psRNATarget
AK288871.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||*|* targets:4281   UAAGUCAUUCUAGCAUUUUCCAC   4303 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
XM_015789040.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||*|* targets:4715   UAAGUCAUUCUAGCAUUUUCCAC   4737 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA	uncharacterized LOC9266525(LOC9266525)	coding protein	psRNATarget
AK121342.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||*|* targets:4549   UAAGUCAUUCUAGCAUUUUCCAC   4571 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence	NA	coding protein	psRNATarget
XM_015773673.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||*|* targets:1765   UAAGUCAUUCUAGCAUUUUCCAC   1787 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA	cytochrome P450 78A5(LOC4333404)	coding protein	psRNATarget
XM_015778179.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||*|* targets:1626   UAAGUCAUUCUAGCAUUUUCCAC   1648 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA	methylthioribose kinase 2(LOC107276080)	coding protein	psRNATarget
XM_015764394.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||||||||||*|* targets:1298   UAAGUCAUUCUAGCAUUUUCCAC   1320 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA	vesicle-associated membrane protein 721(LOC4352920)	coding protein	psRNATarget
XM_015775040.1	ncRNA:23   AUUCAGUAAGAUCGUAAAAGAUA   1   ||||||||||||*|||||||||* targets:1205   UAAGUCAUUCUAACAUUUUCUAC   1227 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA	senescence-specific cysteine protease SAG39-like(LOC107280424)	coding protein	psRNATarget